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PDB code:

Information on SUBCLASS 6.2.2

Subclass Accession number: 6429 Subclass: 6.2.2 Type: HA beta-beta hairpin DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 17 Average sequence ID (%) : 15.5 +/- 17.8 Average RMSD (Å) : 0.753 +/- 0.314 Consensus geometry d (Å): 7 delta (°): 135-180 theta (°): 90-135 rho (°): 270-315

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ez0_A_8	1ez0	A	10	22	YATNAFTGEALPL	EEE-TTTSSEEEE	bxbxaaavxxxxM
1fxl_A_151	1fxl	A	156	168	ILVDQVTGVSRGV	EEE-TTT--EEEE	bxbpaIavxpavb
1fxl_A_65	1fxl	A	70	82	LVRDKITGQSLGY	EEE-TTT--EEEE	xxbpaaavxpavb
1g72_A_444	1g72	A	447	459	RAFDLTTGKAKWT	EEE-TTT--EEEE	bxbxaaavxxabb
1h2t_Z_66	1h2t	Z	71	83	MGLDKMKKTACGF	EEE-TTT-SEEEE	xxbxaaalbpagb
1h2v_Z_66	1h2v	Z	71	83	MGLDKMKKTACGF	EEE-TTT--EEEE	xxbxaaavbpavb
1hl9_A_407	1hl9	A	407	419	TVRHFLTGERLSF	EEEETTT--EEEE	bbbxaaavxxbxb
1l3k_A_131	1l3k	A	136	148	IMTDRGSGKKRGF	EEE-TTT--EEEE	xxbxaaavxxavb
1l3k_A_40	1l3k	A	45	57	VMRDPNTKRSRGF	EEE-TTT--EEEE	xxbxaaavppavb
1lvm_B_154	1lvm	B	154	166	PLVSTRDGFIVGI	EEEETTT--EEEE	xxbxaaavxxaeb
1mda_H_94	1mda	H	99	111	EVFDPVTFLPIAD	EEE-TTT--EEEE	bbbxaaavxxabb
1p27_B_99	1p27	B	104	116	LNLDRRTGYLKGY	EEE-TTTSSEEEE	bxxxaaavxxxab
1p5t_A_35	1p5t	A	39	51	LTLGAQSQILEPL	EEE-TTT-SEEEE	bbxxaaalbxbwa
1pfv_A_141	1pfv	A	142	154	KGTCPKCKSPDQY	EEE-TTT--SSEE	bexpaaavxxlxb
1pgs_*_62	1pgs	-	66	78	YVKNKTTGEWYEI	EEE-TTT--EEEE	bbxxaaavxxbxa
1qni_A_163	1qni	A	168	180	TAIDAETMDVAWQ	EEEETTT-SEEEE	bbbxaaavbxabb
1ri6_A_61	1ri6	A	65	77	YRIAPDDGALTFA	EEE-TTT--EEEE	bxbxaaavpbbpa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1h2t_Z_66	1h2t	Z	7MG7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE	F - 83
1h2t_Z_66	1h2t	Z	7MG7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE	F - 85
1p5t_A_35	1p5t	A	MSESELENOMETHIONINE	K - 35
1pfv_A_141	1pfv	A	ZNZINC ION	C - 145
1pfv_A_141	1pfv	A	ZNZINC ION	P - 146
1pfv_A_141	1pfv	A	ZNZINC ION	K - 147
1pfv_A_141	1pfv	A	ZNZINC ION	C - 148
1pfv_A_141	1pfv	A	ZNZINC ION	K - 149
1pfv_A_141	1pfv	A	ZNZINC ION	S - 150
1pfv_A_141	1pfv	A	ZNZINC ION	Q - 153

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1h2t_Z_66	1h2t	Z	CAPM7GPPPG BINDING SITE FOR CHAIN Z	F - 83

Clusters included in this Subclass

CLUSTER: HA.5.63

CLUSTER: HA.6.58

CLUSTER: HA.7.15

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