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Information on SUBCLASS 2.1.3
Subclass Accession number: 8885
Subclass: 2.1.3 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 32

Average sequence ID (%) : 9.0 +/- 11.7
Average RMSD (Å) : 0.650 +/- 0.241

Consensus geometry
d (Å): 9 delta (°): 0-45 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XpXXXX
(φψ)-conformation: aappaa
Pattern: xxxx[aeknqrs][aeknqrst][acgikltv][adgnpstv]x[adegknqrs]xxx
Conservation:-1.299-0.379-1.422-0.9721.6080.960-0.0441.585-0.2870.8940.103-0.451-0.297
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a88_A_1771a88   A184196WLQGMMGAANAHYHHHHHHS-HHHHHaaaaaaxxaaaaa
1a8s_*_1751a8s   -182194WLQGMAAGHKNAYHHHHHHS-HHHHHaaaaaaxxaaaaa
1afr_A_761afr   A8496RERAKEIPDDYFVHHHHHTS-HHHHHaaaaaaxxaaaaa
1aro_P_1031aro   P103115FQFLQEIKPEAVAHHHHHTS-HHHHHaaaaaaxxaaaaa
1b37_A_3511b37   A354366SRRIEQQSDEQTKHHHHHTS-HHHHHaaaaaabxaaaaa
1brt_*_1801brt   -187199WNTAASGGFFAAAHHHHHHS-HHHHHaaaaaaxxaaaaa
1c4k_A_911c4k   A101113NYEDSILPPFFKSHHHHHHS-HHHHHaaaaaaxxaaaaa
1ci0_A_1301ci0   A134146ERYFKTRPRGSKIHHHHHHS-HHHHHaaaaaapwaaaaa
1dci_A_2491dci   A260272AADISSKSPVAVQHHHHHHS-HHHHHaaaaaaxpaaaaa
1dgf_A_4411dgf   A445457AFYVNVLNEEQRKHHHHHTS-HHHHHaaaaaaxbaaaaa
1e6u_A_2141e6u   A221233SIHVMELAHEVWLHHHHHHS-HHHHHaaaaaaxxaaaaa
1e93_A_4201e93   A423435RALYELLSDDEHQHHHHHHS-HHHHHaaaaaaxxaaaaa
1ea5_A_2591ea5   A263275IHCLREKKPQELIHHHHHHS-HHHHHaaaaaaxxaaaaa
1ekq_A_2411ekq   A249261LNKLSTVTEQDVQHHHHHH--HHHHHaaaaaapbaaaaa
1ho8_A_3331ho8   A347359ENEYQELTSFDEYHHHHHT--HHHHHaaaaaaxxaaaaa
1j58_A_1681j58   A169181TDWLAHTPKEVIAHHHHHTS-HHHHHaaaaaabpaaaaa
1j7n_A_541j7n   A6072EKLLEKVPSDVLEHHHHHTS-HHHHHaaaaaaxpaaaaa
1jp4_A_2911jp4   A292304EYYASRVPESVKSHHHHHHS-HHHHHaaaaaaxxaaaaa
1jq5_A_1561jq5   A156168TKIIANAPPRLLAHHHHHTS-HHHHHaaaaaaxpaaaaa
1kae_A_701kae   A7486AAASERLSDELKQHHHHHHS-HHHHHaaaaaaxxaaaaa
1kg2_A_621kg2   A6274VTDLANAPLDEVLHHHHHHS-HHHHHaaaaaaxxaaaaa
1l0l_A_1711l0l   A171183SENVRKLSRADLTHHHHHH--HHHHHaaaaaapbaaaaa
1l8a_A_3091l8a   A311323IQLMNETVDGDYQHHHHHH--HHHHHaaaaaaxxaaaaa
1m7s_A_4391m7s   A442454GDLYRSYSAKEKTHHHHHHS-HHHHHaaaaaaxxaaaaa
1mx1_A_12791mx1   A12831295VHCLRQKTEEELLHHHHHHS-HHHHHaaaaaaxxaaaaa
1ngn_A_4621ngn   A462474AEVARAADWRDVSHHHHHHS-HHHHHaaaaaaxxaaaaa
1np3_A_2311np3   A244256ANMNYSISNNAEYHHHHHHS-HHHHHaaaaaaxxaaaaa
1o0w_A_231o0w   A2537LLFRALCHSSYANHHHHHHB-HHHHHaaaaaaxxaaaaa
1odm_A_511odm   A5971KEFHMSITPEEKWHHHHHH--HHHHHaaaaaaxbaaaaa
1q16_C_1161q16   C116128PRVRATTTGADILHHHHHH--HHHHHaaaaaaxbaaaaa
1r2f_A_421r2f   A4254IPAWQTLSAAEQQHHHHHTS-HHHHHaaaaaaxxaaaaa
1req_A_4851req   A497509VKLRAERDPEKVKHHHHHHS-HHHHHaaaaaaxxaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a8s_*_1751a8s   *     PPIPROPANOIC ACID F - 181
1a8s_*_1751a8s   *     PPIPROPANOIC ACID F - 200
1afr_A_761afr   A     FE2FE (II) ION E - 105
1aro_P_1031aro   P     HGMERCURY (II) ION T - 121
1aro_P_1031aro   P     HGMERCURY (II) ION A - 124
1aro_P_1031aro   P     HGMERCURY (II) ION C - 125
1ci0_A_1301ci0   A     FMNFLAVIN MONONUCLEOTIDE R - 140
1dci_A_2491dci   A     EDO1,2-ETHANEDIOL K - 275
1dci_A_2491dci   A     EDO1,2-ETHANEDIOL L - 278
1dci_A_2491dci   A     EDO1,2-ETHANEDIOL I - 279
1dci_A_2491dci   A     EDO1,2-ETHANEDIOL R - 282
1dgf_A_4411dgf   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Q - 442
1dgf_A_4411dgf   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 443
1dgf_A_4411dgf   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 445
1dgf_A_4411dgf   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE F - 446
1dgf_A_4411dgf   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 450
1dgf_A_4411dgf   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 451
1dgf_A_4411dgf   A     ACTACETATE ION H - 466
1e6u_A_2141e6u   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE M - 217
1j58_A_1681j58   A     MGMAGNESIUM ION D - 170
1j58_A_1681j58   A     MGMAGNESIUM ION A - 173
1j58_A_1681j58   A     MGMAGNESIUM ION H - 174
1jq5_A_1561jq5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 158
1jq5_A_1561jq5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 159
1jq5_A_1561jq5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 161
1jq5_A_1561jq5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE A - 162
1jq5_A_1561jq5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE P - 163
1jq5_A_1561jq5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 166
1jq5_A_1561jq5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 169
1jq5_A_1561jq5   A     ZNZINC ION D - 173
1jq5_A_1561jq5   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE D - 173
1kae_A_701kae   A     MSESELENOMETHIONINE L - 80
1kae_A_701kae   A     MSESELENOMETHIONINE E - 83
1kae_A_701kae   A     MSESELENOMETHIONINE L - 84
1kae_A_701kae   A     MSESELENOMETHIONINE K - 85
1kae_A_701kae   A     MSESELENOMETHIONINE Q - 86
1kg2_A_621kg2   A     GOLGLYCEROL V - 62
1kg2_A_621kg2   A     GOLGLYCEROL T - 63
1kg2_A_621kg2   A     GOLGLYCEROL D - 64
1kg2_A_621kg2   A     GOLGLYCEROL L - 65
1kg2_A_621kg2   A     GOLGLYCEROL N - 67
1kg2_A_621kg2   A     GOLGLYCEROL A - 68
1kg2_A_621kg2   A     GOLGLYCEROL P - 69
1kg2_A_621kg2   A     GOLGLYCEROL E - 72
1r2f_A_421r2f   A     FEFE (III) ION D - 67
1r2f_A_421r2f   A     FEFE (III) ION Q - 70
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1odm_A_511odm   A AC2SO4 BINDING SITE FOR CHAIN AR - 53

Clusters included in this Subclass
CLUSTER: HH.2.8