PDB: 1j8h Compound: hla class ii histocompatibility antigen, dr alpha Classification: IMMUNE SYSTEM Entry date in PDB: 2002-03-13 Resolution [Å]: 2.40 R-Factor: 0.211

CHAIN: A SWISS-PROT/TREMBL: P01903    KEYWORD: 3D-structure    Glycoprotein    MHC II    Polymorphism    Signal    Transmembrane    SCOP: b.1.1.2 All beta proteins    Immunoglobulin-like beta-sandwich    Immunoglobulin    C1 set domains (antibody constant domain-like)    Class II MHC alpha chain, C-terminal domain    Human (Homo sapiens), HLA-DR group SCOP: d.19.1.1 Alpha and beta proteins (a+b)    MHC antigen-recognition domain    MHC antigen-recognition domain    MHC antigen-recognition domain    Class II MHC alpha chain, N-terminal domain    Human (Homo sapiens), HLA-DR4 GO:  membrane    immune response    CHAIN: C SWISS-PROT/TREMBL: P03437    KEYWORD: 3D-structure    Envelope protein    Glycoprotein    Hemagglutinin    Signal    GO:  viral envelope    heterophilic cell adhesion    viral infectious cycle

Image Source: PDB

Loops in ArchDB95 clusters

1j8h_E_10 - AR => SUBCLASS : 3.3.2
1j8h_E_4 - AR => SUBCLASS : 3.4.2
1j8h_E_107 - AR => SUBCLASS : 3.12.1
1j8h_E_10 - AR => SUBCLASS : 4.1.1
1j8h_D_9 - AR => SUBCLASS : 4.1.1
1j8h_D_75 - AR => SUBCLASS : 8.2.1
1j8h_E_76 - AR => SUBCLASS : 8.2.1
1j8h_D_110 - AR => SUBCLASS : 8.33.1
1j8h_E_112 - AR => SUBCLASS : 9.4.1
1j8h_D_55 - HA => SUBCLASS : 3.2.1
1j8h_E_31 - HA => SUBCLASS : 3.8.1
1j8h_E_65 - HA => SUBCLASS : 4.2.1
1j8h_E_88 - HA => SUBCLASS : 4.4.1
1j8h_E_42 - HA => SUBCLASS : 4.33.1
1j8h_D_31 - HA => SUBCLASS : 5.3.1
1j8h_D_86 - HA => SUBCLASS : 6.12.2
1j8h_E_180 - HA => SUBCLASS : 8.5.1

Loops not clustered in ArchDB

1j8h_D_2 - AR
1j8h_E_173 - AR
1j8h_E_167 - AR
1j8h_E_143 - AR
1j8h_E_56 - AR
1j8h_E_23 - AR
1j8h_E_19 - AR
1j8h_D_159 - AR
1j8h_D_137 - AR
1j8h_D_18 - AR
1j8h_D_23 - AR
1j8h_D_44 - AR
1j8h_D_104 - AR
1j8h_E_191 - EH
1j8h_E_127 - EH
1j8h_D_63 - HA
1j8h_E_210 - HA
1j8h_D_164 - HA
1j8h_D_124 - HA
1j8h_E_158 - HA
1j8h_E_135 - HE
1j8h_E_201 - HE

1ao7 E - percentage of sequence identity: 75
1bd2 D - percentage of sequence identity: 66
1bd2 E - percentage of sequence identity: 75
1d5m B - percentage of sequence identity: 100
1fng A - percentage of sequence identity: 80
1fv1 B - percentage of sequence identity: 90
1fyt E - percentage of sequence identity: 100
1g6r B - percentage of sequence identity: 66
1g6r D - percentage of sequence identity: 66
1i3r B - percentage of sequence identity: 77
1i9e A - percentage of sequence identity: 62
1jck A - percentage of sequence identity: 66
1jck C - percentage of sequence identity: 66
1jk8 A - percentage of sequence identity: 62
1kgc D - percentage of sequence identity: 66
1kgc E - percentage of sequence identity: 68
1ktd B - percentage of sequence identity: 77
1ktk E - percentage of sequence identity: 65
1ktk F - percentage of sequence identity: 65
1l0x A - percentage of sequence identity: 66
1l0x C - percentage of sequence identity: 66
1l0y A - percentage of sequence identity: 66
1l0y C - percentage of sequence identity: 66
1lnu B - percentage of sequence identity: 64
1lp9 F - percentage of sequence identity: 66
1lp9 M - percentage of sequence identity: 66
1mi5 E - percentage of sequence identity: 68
1mwa B - percentage of sequence identity: 66
1mwa D - percentage of sequence identity: 66
1qrn E - percentage of sequence identity: 74
1qse E - percentage of sequence identity: 75
1qsf E - percentage of sequence identity: 75
1s9v B - percentage of sequence identity: 66
1sbb A - percentage of sequence identity: 66
1sbb C - percentage of sequence identity: 66
1tcr B - percentage of sequence identity: 66
1u3h B - percentage of sequence identity: 60
1u3h F - percentage of sequence identity: 60
1uvq B - percentage of sequence identity: 67
1ymm E - percentage of sequence identity: 65
1zgl P - percentage of sequence identity: 68
1zgl R - percentage of sequence identity: 68
1zgl T - percentage of sequence identity: 68
1zgl V - percentage of sequence identity: 68
2ak4 E - percentage of sequence identity: 76
2ak4 J - percentage of sequence identity: 76
2ak4 P - percentage of sequence identity: 76
2ak4 U - percentage of sequence identity: 76
2axh A - percentage of sequence identity: 79
2axh B - percentage of sequence identity: 79
2axj A - percentage of sequence identity: 78
2axj B - percentage of sequence identity: 78
2bnq E - percentage of sequence identity: 75
2bnr E - percentage of sequence identity: 75
2bnu B - percentage of sequence identity: 75
2ckb B - percentage of sequence identity: 66
2ckb D - percentage of sequence identity: 66