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Information on SUBCLASS 1.1.5
Subclass Accession number: 4352
Subclass: 1.1.5 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 32

Average sequence ID (%) : 8.6 +/- 13.1
Average RMSD (Å) : 0.538 +/- 0.176

Consensus geometry
d (Å): 7 delta (°): 0-45 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XXpXX
(φψ)-conformation: aapaa
Pattern: xx[acfilmtv]x[adegknqrst][dhknqrstw]xxxx
Conservation:-0.589-1.6100.806-0.2560.0282.0840.5300.055-0.812-0.235
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bdb_*_2301bdb   -232241YVFFATRGDAHHHHH-HHHHaaaaaxaaaa
1bs0_A_2491bs0   A254263YLLQFARHLIHHHHH-HHHHaaaaaxaaaa
1c3c_A_3891c3c   A391400EYLLEDEEVKHHHHT-HHHHaaaaaxaaaa
1dpg_A_1881dpg   A190199ALRFGNPIFDHHHHT-HHHHaaaaabaaaa
1ea5_A_2011ea5   A207216GMHILSPGSRHHHHH-HHHHaaaaaxaaaa
1f0l_A_1141f0l   A115124MEQVGTEEFIHHHHTSHHHHaaaaaxaaaa
1f0l_A_2911f0l   A291300SETADNLEKTHHHHT-HHHHaaaaabaaaa
1fqi_A_3001fqi   A301310SELIRDPKGRHHHHTSHHHHaaaaabaaaa
1gjw_A_2471gjw   A251260EIIYNKENVKHHHHTSHHHHaaaaaxaaaa
1hkk_A_1041hkk   A107116TDMVATANNRHHHHTSHHHHaaaaabaaaa
1inp_*_41inp   -2029RACRQQETLFHHHHHSHHHHaaaaaxaaaa
1itk_A_3701itk   A373382IALKRDPDYRHHHHHSHHHHaaaaaxaaaa
1iyn_A_2221iyn   A225234AALFEDPSFKHHHHHSTTHHaaaaaxaaaa
1j8u_A_3451j8u   A345354AGLLSSFGELHHHHT-HHHHaaaaabaaaa
1jdr_A_2331jdr   A236245YSLIQDPKYLHHHHHSHHHHaaaaaxaaaa
1kho_A_1141kho   A128137FGDADTPYHAHHHHTSHHHHaaaaaxaaaa
1ltz_A_1991ltz   A199208AGILSSKSESHHHHT-HHHHaaaaabaaaa
1m8z_A_8531m8z   A854863MEFSQDQHGSHHHHTSHHHHaaaaaxaaaa
1n5m_A_2041n5m   A210219GMHILSLPSRHHHHHSHHHHaaaaabaaaa
1nij_A_1041nij   A109118QTFFSHEVLCHHHHHSHHHHaaaaaxaaaa
1njk_A_201njk   A3342DGLENSDSFQHHHHS-HHHHaaaaapaaaa
1nof_A_2121nof   A212221DPVLKDSDASHHHHT-HHHHaaaaabaaaa
1nq7_A_2551nq7   A275284EFAKRITGFMHHHHT-HHHHaaaaaxaaaa
1ofw_A_971ofw   A103112QQTKERRECAHHHHHSHHHHaaaaabaaaa
1olp_A_1141olp   A128137FGDLNTPYHAHHHHTSHHHHaaaaaxaaaa
1ov9_A_41ov9   A413TKTLLNIRSLHHHHT-HHHHaaaaabaaaa
1pdu_A_4741pdu   A490499DHVTYNAEAQHHHHH-HHHHaaaaaxaaaa
1qgu_B_351qgu   B4251FAWTTTAEYEHHHHTSHHHHaaaaaxaaaa
1r6f_A_2041r6f   A205214EIFKASAEYKHHHHTSHHHHaaaaaxaaaa
1ub2_A_3731ub2   A376385MAMKMDPEYRHHHHHSHHHHaaaaaxaaaa
1up8_A_1831up8   A191200DQLNGLEWFNHHHHTSHHHHaaaaabaaaa
1vjg_A_1851vjg   A193202RIVENWDAWLHHHHT-HHHHaaaaaxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1fqi_A_3001fqi   A     MSESELENOMETHIONINE F - 300
1fqi_A_3001fqi   A     MSESELENOMETHIONINE I - 304
1fqi_A_3001fqi   A     MSESELENOMETHIONINE K - 308
1fqi_A_3001fqi   A     MSESELENOMETHIONINE S - 312
1fqi_A_3001fqi   A     MSESELENOMETHIONINE F - 313
1fqi_A_3001fqi   A     MSESELENOMETHIONINE L - 317
1hkk_A_1041hkk   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS D - 108
1hkk_A_1041hkk   A     ZNZINC ION D - 108
1hkk_A_1041hkk   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS M - 109
1hkk_A_1041hkk   A     ZNZINC ION M - 109
1hkk_A_1041hkk   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS N - 115
1hkk_A_1041hkk   A     ZNZINC ION N - 115
1itk_A_3701itk   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 371
1iyn_A_2221iyn   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 223
1j8u_A_3451j8u   A     FE2FE (II) ION A - 345
1j8u_A_3451j8u   A     FE2FE (II) ION G - 346
1jdr_A_2331jdr   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 234
1jdr_A_2331jdr   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 235
1kho_A_1141kho   A     ZNZINC ION H - 126
1kho_A_1141kho   A     ZNZINC ION Y - 127
1kho_A_1141kho   A     ZNZINC ION G - 129
1kho_A_1141kho   A     ZNZINC ION D - 130
1kho_A_1141kho   A     ZNZINC ION T - 133
1kho_A_1141kho   A     ZNZINC ION Y - 135
1kho_A_1141kho   A     ZNZINC ION H - 136
1ltz_A_1991ltz   A     FEFE (III) ION A - 199
1ltz_A_1991ltz   A     FEFE (III) ION G - 200
1njk_A_201njk   A     MSESELENOMETHIONINE A - 30
1njk_A_201njk   A     MSESELENOMETHIONINE R - 31
1njk_A_201njk   A     MSESELENOMETHIONINE W - 32
1njk_A_201njk   A     IODIODIDE ION W - 32
1njk_A_201njk   A     MSESELENOMETHIONINE D - 33
1njk_A_201njk   A     MSESELENOMETHIONINE G - 34
1njk_A_201njk   A     MSESELENOMETHIONINE L - 35
1njk_A_201njk   A     IODIODIDE ION E - 36
1njk_A_201njk   A     MSESELENOMETHIONINE S - 38
1njk_A_201njk   A     MSESELENOMETHIONINE S - 40
1njk_A_201njk   A     MSESELENOMETHIONINE F - 41
1njk_A_201njk   A     MSESELENOMETHIONINE Q - 42
1nq7_A_2551nq7   A     ARL7-(3,5-DITERT-BUTYLPHENYL)-3-METHYLOCTA-2,4,6-TRIENOIC ACID C - 262
1nq7_A_2551nq7   A     ARL7-(3,5-DITERT-BUTYLPHENYL)-3-METHYLOCTA-2,4,6-TRIENOIC ACID Q - 265
1nq7_A_2551nq7   A     ARL7-(3,5-DITERT-BUTYLPHENYL)-3-METHYLOCTA-2,4,6-TRIENOIC ACID I - 266
1nq7_A_2551nq7   A     ARL7-(3,5-DITERT-BUTYLPHENYL)-3-METHYLOCTA-2,4,6-TRIENOIC ACID A - 269
1nq7_A_2551nq7   A     ARL7-(3,5-DITERT-BUTYLPHENYL)-3-METHYLOCTA-2,4,6-TRIENOIC ACID Y - 272
1ofw_A_971ofw   A     HECHEME C C - 97
1ofw_A_971ofw   A     HECHEME C V - 98
1ofw_A_971ofw   A     HECHEME C C - 100
1ofw_A_971ofw   A     HECHEME C H - 101
1ofw_A_971ofw   A     HECHEME C E - 102
1ofw_A_971ofw   A     HECHEME C Q - 103
1ofw_A_971ofw   A     HECHEME C Q - 104
1ofw_A_971ofw   A     HECHEME C T - 105
1ofw_A_971ofw   A     HECHEME C R - 108
1ofw_A_971ofw   A     HECHEME C R - 109
1ofw_A_971ofw   A     HECHEME C E - 110
1ofw_A_971ofw   A     HECHEME C C - 111
1ofw_A_971ofw   A     HECHEME C A - 112
1qgu_B_351qgu   B     MO6MAGNESIUM ION, 6 WATERS COORDINATED V - 38
1qgu_B_351qgu   B     EDO1,2-ETHANEDIOL E - 51
1qgu_B_351qgu   B     EDO1,2-ETHANEDIOL A - 52
1qgu_B_351qgu   B     EDO1,2-ETHANEDIOL N - 54
1ub2_A_3731ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 374
1ub2_A_3731ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 375
1ub2_A_3731ub2   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 378
1vjg_A_1851vjg   A     MSESELENOMETHIONINE W - 198
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1hkk_A_1041hkk   A AC8ZN2 BINDING SITE FOR CHAIN AD - 108
1hkk_A_1041hkk   A AC8ZN2 BINDING SITE FOR CHAIN AN - 115
1ofw_A_971ofw   A AC3HEC BINDING SITE FOR CHAIN AC - 97
1ofw_A_971ofw   A AC3HEC BINDING SITE FOR CHAIN AC - 100
1ofw_A_971ofw   A AC3HEC BINDING SITE FOR CHAIN AH - 101
1ofw_A_971ofw   A AC3HEC BINDING SITE FOR CHAIN AQ - 104
1ofw_A_971ofw   A AC4HEC BINDING SITE FOR CHAIN AT - 105
1olp_A_1141olp   A BC2ZN BINDING SITE FOR CHAIN AH - 126
1olp_A_1141olp   A AC9ZN BINDING SITE FOR CHAIN AD - 130
1olp_A_1141olp   A BC1ZN BINDING SITE FOR CHAIN AH - 136

Clusters included in this Subclass
CLUSTER: HH.1.19
CLUSTER: HH.2.24