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Information on SUBCLASS 2.1.9
Subclass Accession number: 7131
Subclass: 2.1.9 PSSM
Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 27

Average sequence ID (%) : 11.1 +/- 15.2
Average RMSD (Å) : 0.730 +/- 0.190

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225
Consensus Sequence: hXXpXX
(φψ)-conformation: bbabaa
Pattern: [afgiltv][iltvwy]xx[degknrst][adegnps][adegknrst][adegknqrt]xxx[afgilmv]x
Conservation:0.9630.745-1.099-1.5751.8790.489-0.364-0.379-0.203-0.415-0.7651.290-0.567
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ars_*_2671ars   -272284LVAADSETVDRAFEE-SSTTHHHHHHbbbabaaaaaaaa
1b0z_A_2621b0z   A265277LVNYEPSLHYVSEEEESSGGGHHHHHxbbabaaaaaaaa
1ble_*_791ble   -8294LLFENPSDIVSLIEEESSSHHHHHHHxbbabaaaaaaaa
1cdo_A_2191cdo   A222234AVDLNPDKFEKAKEE-S-GGGHHHHHxbbaxaaaaaaaa
1cf2_O_501cf2   O5062LYVAIPERVKLFEEEESSGGGHHHHHxbbabaaaaaaaa
1d1t_A_2181d1t   A221233GIDLNKDKFEKAMEE-S-GGGHHHHHxbbaxaaaaaaaa
1dii_A_2441dii   A250262VIFEDEADIVEIVEEES-GGGHHHHHbxbaxaaaaaaaa
1e3i_A_2221e3i   A225237AIDINGEKFPKAKEE-S-GGGHHHHHbbbabaaaaaaaa
1e8g_A_2761e8g   A281293ITLPKDGDLKQAVEEE-STTHHHHHHbxbaxaaaaaaaa
1evl_A_5421evl   A544556IMNITDSQSEYVNEEESSGGGHHHHHbbxabaaaaaaaa
1g8m_A_1441g8m   A144156TVVCDPADYSSVAEEE--GGGHHHHHxbbabaaaaaaaa
1gpu_A_621gpu   A6375FVLSNGHAVALLYEEESSGGGHHHHHbbxaxaaaaaaaa
1gyt_A_1561gyt   A159171FNVPTRRELTSGEEE-SSGGGHHHHHxxbabaaaaaaaa
1hqk_A_481hqk   A5163VRVPGSWEIPVAAEEESSGGGHHHHHbbbabaaaaaaaa
1i7q_A_671i7q   A7082VQALTANGPALLPEEE-SSTGGGHHHbbxabaaaaaaaa
1j5s_A_3371j5s   A339351LYVLDPTHLPTISEEESSGGGHHHHHbbbabaaaaaaaa
1l7d_A_1971l7d   A200212ATDVRAATKEQVEEE-S-STTHHHHHbbbaxaaaaaaaa
1n8k_A_2181n8k   A221233GVDINKDKFAKAKEE-S-GGGHHHHHxbbabaaaaaaaa
1o4v_A_31o4v   A618IIMGSDSDLPVMKEEES-GGGHHHHHbbbabaaaaaaaa
1oni_A_761oni   A8193VLLADINDFNTVNEEES-GGGHHHHHbbbabaaaaaaaa
1p0f_A_12171p0f   A12201232GVGTHKDKFPKAIEE-S-GGGHHHHHxbbabaaaaaaaa
1pjr_*_3541pjr   -356368VLYRTNAQSRVMEEEESSGGGHHHHHbbbabaaaaaaaa
1qgd_A_591qgd   A6072FVLSNGHGSMLIYEEESSGGGHHHHHbbxaxaaaaaaaa
1qsg_A_341qsg   A3749FTYQNDKLKGRVEEEESSTTTHHHHHbbbabaaaaaaaa
1rdr_*_4031rdr   -403414.WTKDPRNTQDHV.EES-TTSHHHHH.bbabaaaaaaaa
1rvv_1_481rvv   15163AWVPGAFEIPFAAEEESSGGGHHHHHbxbabaaaaaaaa
1ufk_A_1441ufk   A147159GVDIDPMVLPQAEEEES-GGGHHHHHbbbabaaaaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1ars_*_2671ars   *     PLPPYRIDOXAL-5'-PHOSPHATE V - 267
1ars_*_2671ars   *     PLPPYRIDOXAL-5'-PHOSPHATE G - 268
1cdo_A_2191cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 223
1cdo_A_2191cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE D - 224
1cdo_A_2191cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 225
1cdo_A_2191cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 226
1cdo_A_2191cdo   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE K - 229
1cf2_O_501cf2   O     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 53
1cf2_O_501cf2   O     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE F - 61
1d1t_A_2181d1t   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 222
1d1t_A_2181d1t   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE D - 223
1d1t_A_2181d1t   A     ZNZINC ION L - 224
1d1t_A_2181d1t   A     ACTACETATE ION L - 224
1d1t_A_2181d1t   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 224
1d1t_A_2181d1t   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 225
1d1t_A_2181d1t   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE K - 228
1d1t_A_2181d1t   A     CACCACODYLATE ION M - 233
1d1t_A_2181d1t   A     CACCACODYLATE ION A - 234
1d1t_A_2181d1t   A     CACCACODYLATE ION V - 235
1e3i_A_2221e3i   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 226
1e3i_A_2221e3i   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE D - 227
1e3i_A_2221e3i   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 228
1e3i_A_2221e3i   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 229
1e3i_A_2221e3i   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE K - 232
1g8m_A_1441g8m   A     MSESELENOMETHIONINE T - 144
1g8m_A_1441g8m   A     GGUANOSINE-5'-MONOPHOSPHATE T - 144
1g8m_A_1441g8m   A     MSESELENOMETHIONINE S - 154
1g8m_A_1441g8m   A     MSESELENOMETHIONINE V - 155
1g8m_A_1441g8m   A     GGUANOSINE-5'-MONOPHOSPHATE V - 155
1g8m_A_1441g8m   A     MSESELENOMETHIONINE A - 156
1g8m_A_1441g8m   A     GGUANOSINE-5'-MONOPHOSPHATE A - 156
1g8m_A_1441g8m   A     MSESELENOMETHIONINE K - 157
1g8m_A_1441g8m   A     GGUANOSINE-5'-MONOPHOSPHATE K - 157
1gpu_A_621gpu   A     THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE N - 67
1gpu_A_621gpu   A     THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE G - 68
1gpu_A_621gpu   A     THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE H - 69
1gpu_A_621gpu   A     THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE A - 70
1n8k_A_2181n8k   A     MPD2-METHYL-2,4-PENTANEDIOL R - 218
1n8k_A_2181n8k   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) V - 222
1n8k_A_2181n8k   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) D - 223
1n8k_A_2181n8k   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) I - 224
1n8k_A_2181n8k   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) N - 225
1n8k_A_2181n8k   A     NAJNICOTINAMIDE-ADENINE-DINUCLEOTIDE (ACIDIC FORM) K - 228
1oni_A_761oni   A     BEZBENZOIC ACID I - 86
1oni_A_761oni   A     BEZBENZOIC ACID F - 89
1oni_A_761oni   A     BEZBENZOIC ACID N - 90
1oni_A_761oni   A     BEZBENZOIC ACID N - 93
1p0f_A_12171p0f   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 1221
1p0f_A_12171p0f   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 1222
1p0f_A_12171p0f   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE T - 1223
1p0f_A_12171p0f   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE H - 1224
1p0f_A_12171p0f   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE K - 1227
1p0f_A_12171p0f   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE F - 1228
1qgd_A_591qgd   A     TPPTHIAMINE DIPHOSPHATE N - 64
1qgd_A_591qgd   A     TPPTHIAMINE DIPHOSPHATE H - 66
1qsg_A_341qsg   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 39
1qsg_A_341qsg   A     GLCGLUCOSE Q - 40
1qsg_A_341qsg   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Q - 40
1qsg_A_341qsg   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 44
1rvv_1_481rvv   1     INI5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE P - 54
1rvv_1_481rvv   1     INI5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE G - 55
1rvv_1_481rvv   1     INI5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE A - 56
1rvv_1_481rvv   1     INI5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE F - 57
1rvv_1_481rvv   1     INI5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE E - 58
1rvv_1_481rvv   1     INI5-NITRO-6-RIBITYL-AMINO-2,4(1H,3H)-PYRIMIDINEDIONE I - 59
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gpu_A_621gpu   A AC2THD BINDING SITE FOR CHAIN AH - 69
1qgd_A_591qgd   A TPACOFACTOR BINDINGH - 66

Clusters included in this Subclass
CLUSTER: EH.4.24
CLUSTER: EH.4.52
CLUSTER: EH.5.34
CLUSTER: EH.5.7
CLUSTER: EH.6.23
CLUSTER: EH.6.4
CLUSTER: EH.6.94