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Information on SUBCLASS 2.2.2
Subclass Accession number: 8201
Subclass: 2.2.2 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 36

Average sequence ID (%) : 9.9 +/- 13.5
Average RMSD (Å) : 0.750 +/- 0.158

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: XXXXXX
(φψ)-conformation: aapabb
Pattern: xx[adegknqrst]xx[dehknpqrst]xx[cfiklmtv][afilmtv]
Conservation:-0.376-0.2360.107-0.561-0.5110.218-1.071-0.5950.4892.535
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a0c_A_1111a0c   A128137YLKTSKTKVLHHTT-S-EEEaaaabaxbxa
1a0d_A_1091a0d   A126135YMKTSKTKLLHHTT-S-EEENaaabaxbxa
1a0e_A_1111a0e   A128137RMKDSNVKLLHHHHSS-EEEaaaabaxbxa
1a88_A_2351a88   A238247SAELLANATLHHHHSTTEEEaaaaxabbbb
1ars_*_2381ars   -243252FAAMHKELIVHHHH-S-EEEaaaababbbb
1bkj_A_691bkj   A6978YVESAAEFLVHHHHSSEEEEaaaaxabbbb
1bxk_A_121bxk   A2130IINETSDAVVHHHH-S-EEEaaaabaxbbb
1chr_A_2281chr   A234243LSDNNRVAIMHHHHS-SEEEaaaaxapxxb
1e9i_A_2691e9i   A279288LTKQYPIVSIHHHHS-EEEEaaaabaxabb
1eua_A_981eua   A103112AATEGTIPLIHHHHSSS-EEaaaaxabxbb
1f0x_A_4001f0x   A411420YFKQAEGDFFHHHHSS-EEEaaaaxaxbbb
1f5v_A_691f5v   A6978HVAQAAEFWVHHHHSSEEEEaaaapabbbb
1iab_*_241iab   -3746LEEKTCIRFVHHHHSS-EEEaaaabaxbbb
1inl_A_2121inl   A222231ISKVFPITRVHHHH-SEEEEaaaaxabbbx
1iye_A_2451iye   A245254SLYLADEVFMHHHH-SEEEEaaaaxabbbb
1jqk_A_3431jqk   A346355IAECFHTQIIHHHTSS-EEEaaaabapbbb
1kew_A_111kew   A2029IIKNTQDTVVHHHH-S-EEEaaaabaxbbb
1l0w_A_3131l0w   A313322VFQEAESVKAHHHHSSEEEEaaaaxabbxb
1l6j_A_1341l6j   A148157WSAVTPLTFTHHHTSS-EEEaaaabaxbbb
1muc_A_2321muc   A238247LNQRTPAPIMHHHH-SS-EEaaaaxabxxb
1mxs_A_1101mxs   A115124AGVDSEIPLLHHHH-SS-EEaaaaxaxxbb
1ni4_B_1501ni4   B159168SAIRDNNPVVHHHHSSS-EEaaaaxabpbb
1nox_*_751nox   -7584HVEEAPVVLVHHHHSSEEEEaaaaxabbxb
1npd_A_1591npd   A171180VNENTDCVVTHHTTSS-EEEaaaabaxbbb
1ols_B_1681ols   B177186SCIEDKNPCIHHHHSSS-EEaaaaxabwbb
1oy0_A_2031oy0   A209218ITGKLTIPTVHHHH-SS-EEaaaaxaxxbb
1pdz_*_3021pdz   -308317MTSGTTIQIVHHHH-SSEEEaaaababxbx
1qs0_B_1531qs0   B162171ASIECDDPVIHHHHSSS-EEaaaapabwbx
1rbl_A_3391rbl   A347354DLMREDHI..HHHH-SEE..aaaaxabb..
1sml_A_931sml   A96105LKRRTGAKVAHHHHSS-EEEaaaabaxbbb
1tfr_*_1011tfr   -115124LKAYMPYIVMHHHHSSSEEEaaaaxabxbx
1tyf_A_701tyf   A7988TMQFIKPDVSHHHHSSS-EEaaaaxaxxbx
1ukz_*_291ukz   -3645LVKDYSFVHLHHHHSS-EEEaaaabaxbxb
2ak3_A_182ak3   A2534ITKHFELKHLHHHHB--EEEaaaabxbxbb
2ay1_A_2332ay1   A243252IASRIPEVLIHHHH-SSEEEaaaaxabbbb
2bgt_*_2682bgt   -272281ETMASDAVMLHHHHSSSEEEaaaaxabxxb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a0c_A_1111a0c   A     COCOBALT (II) ION W - 138
1a0d_A_1091a0d   A     MNMANGANESE (II) ION W - 136
1ars_*_2381ars   *     PLPPYRIDOXAL-5'-PHOSPHATE S - 254
1ars_*_2381ars   *     PLPPYRIDOXAL-5'-PHOSPHATE S - 255
1bkj_A_691bkj   A     FMNFLAVIN MONONUCLEOTIDE Y - 69
1bxk_A_121bxk   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 12
1bxk_A_121bxk   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 13
1bxk_A_121bxk   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 14
1bxk_A_121bxk   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 32
1e9i_A_2691e9i   A     MGMAGNESIUM ION E - 289
1f5v_A_691f5v   A     FMNFLAVIN MONONUCLEOTIDE H - 69
1iye_A_2451iye   A     PGU4-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-BUTYRIC ACID S - 255
1iye_A_2451iye   A     PGU4-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-BUTYRIC ACID G - 256
1kew_A_111kew   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 11
1kew_A_111kew   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 12
1kew_A_111kew   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 13
1kew_A_111kew   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 31
1kew_A_111kew   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE D - 32
1muc_A_2321muc   A     MNMANGANESE (II) ION M - 247
1ni4_B_1501ni4   B     MSESELENOMETHIONINE I - 157
1ni4_B_1501ni4   B     MSESELENOMETHIONINE K - 158
1ni4_B_1501ni4   B     MSESELENOMETHIONINE I - 161
1nox_*_751nox   *     FMNFLAVIN MONONUCLEOTIDE H - 75
1npd_A_1591npd   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 160
1npd_A_1591npd   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 161
1qs0_B_1531qs0   B     MSESELENOMETHIONINE P - 153
1qs0_B_1531qs0   B     MSESELENOMETHIONINE A - 156
1qs0_B_1531qs0   B     MSESELENOMETHIONINE K - 157
1qs0_B_1531qs0   B     MSESELENOMETHIONINE L - 159
1qs0_B_1531qs0   B     MSESELENOMETHIONINE L - 160
1qs0_B_1531qs0   B     MSESELENOMETHIONINE I - 164
1qs0_B_1531qs0   B     MSESELENOMETHIONINE E - 165
1qs0_B_1531qs0   B     MSESELENOMETHIONINE P - 169
1qs0_B_1531qs0   B     MSESELENOMETHIONINE V - 170
1qs0_B_1531qs0   B     MSESELENOMETHIONINE I - 171
1ukz_*_291ukz   *     ADPADENOSINE-5'-DIPHOSPHATE K - 29
1ukz_*_291ukz   *     AMPADENOSINE MONOPHOSPHATE K - 29
1ukz_*_291ukz   *     ADPADENOSINE-5'-DIPHOSPHATE G - 30
1ukz_*_291ukz   *     ADPADENOSINE-5'-DIPHOSPHATE T - 31
1ukz_*_291ukz   *     ADPADENOSINE-5'-DIPHOSPHATE Q - 32
1ukz_*_291ukz   *     AMPADENOSINE MONOPHOSPHATE S - 46
2ak3_A_182ak3   A     AMPADENOSINE MONOPHOSPHATE K - 18
2ak3_A_182ak3   A     AMPADENOSINE MONOPHOSPHATE S - 35
2ay1_A_2332ay1   A     PLPPYRIDOXAL-5'-PHOSPHATE A - 254
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ols_B_1681ols   B KBPOTASSIUM-BINDING SITE IN THE BETA-SUBUNITC - 178
1ols_B_1681ols   B KBPOTASSIUM-BINDING SITE IN THE BETA-SUBUNITD - 181
1ols_B_1681ols   B KBPOTASSIUM-BINDING SITE IN THE BETA-SUBUNITN - 183

Clusters included in this Subclass
CLUSTER: HE.2.105
CLUSTER: HE.2.110
CLUSTER: HE.2.135
CLUSTER: HE.3.14
CLUSTER: HE.4.139
CLUSTER: HE.4.79
CLUSTER: HE.5.270