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PDB code:

Information on SUBCLASS 2.4.2

Subclass Accession number: 8241 Subclass: 2.4.2 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 29 Average sequence ID (%) : 13.2 +/- 15.0 Average RMSD (Å) : 0.659 +/- 0.235 Consensus geometry d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 180-225

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a4i_A_258	1a4i	A	258	268	YDEAKERASFI..	HHHHTTT-SEE..	aaaaaaaxabb..
1a53_*_66	1a53	-	70	82	SKFMERYAVGLSI	HHHHTTT-SEEEE	aaaaaaaxabbbb
1cqz_A_134	1cqz	A	140	152	MCELSQHFDFLIE	HHHHGGG-SEEEE	aaaaaaababbxx
1dqw_A_41	1dqw	A	48	60	VEALGPKICLLKT	HHHHGGG-SEEEE	aaaaaaababbxb
1duv_G_89	1duv	G	93	105	ARVLGRMYDGIQY	HHHHTTT-SEEEE	aaaaaaababbbb
1dvj_A_189	1dvj	A	189	201	PGETLRFADAIIV	HHHHTTT-SEEEE	aaaaaaaxabbbb
1e4c_P_134	1e4c	P	140	152	VALALKNRKATLL	HHHHTSS-SEEEE	aaaaaaababbxb
1ej2_A_17	1ej2	A	23	35	IKSILEEVDELII	HHHHTTT-SEEEE	aaaaaaababbxb
1f9a_A_14	1f9a	A	20	32	IKKIAEEVDEIII	HHHHTTT-SEEEE	aaaaaaababbxb
1ffr_A_375	1ffr	A	375	387	YNVAQNSMDHIFL	HHHHGGG-SEEEE	aaaaaaababbxx
1geq_A_18	1geq	A	25	37	LLALDEYAGAIEL	HHHHGGGBS-EEE	aaaaaaaxabbbb
1iib_A_44	1iib	A	44	56	AGEKGQNADVVLL	HHHHHTT-SEEEE	aaaaaaaxabbbb
1iow_*_163	1iow	-	167	179	LRLAFQHDEEVLI	HHHHTTT-SEEEE	aaaaaaababbbb
1j79_A_22	1j79	A	29	41	VPYTSEIYGRAIV	HHHHHTT-SEEEE	aaaaaaaxabbxx
1kbl_A_753	1kbl	A	753	765	ADAIAEEAEFFSF	HHHHTTT-SEEEE	aaaaaaaxabbbx
1lbq_A_287	1lbq	A	291	303	AEFLGPKVDGLMF	HHHHGGG-S-EEE	aaaaaaababbbb
1li4_A_262	1li4	A	262	274	MDEACQEGNIFVT	HHHHTTT-SEEEE	aaaaaaaxabbbb
1ml4_A_90	1ml4	A	94	106	IKTVEQYCDVIVI	HHHHTTT-SEEEE	aaaaaaababbbb
1o6z_A_109	1o6z	A	124	136	QSSLDEHNDDYIS	HHHHHTT-S--EE	aaaaaaababbxb
1o94_A_239	1o94	A	244	256	VEMADSLVDMWDI	HHHHGGG-SEEEE	aaaaaaababxbb
1p3y_1_52	1p3y	1	52	63	AHTVSYFCDHVY.	HHHHGGGSSEEE.	aaaaaaababbx.
1pii_*_220	1pii	-	223	235	VRELSHFANGFLI	HHHHTTT-SEEEE	aaaaaaababbbb
1pii_*_70	1pii	-	74	86	AAIYKHYASAISV	HHHHTTT-SEEEE	aaaaaaaxabbxb
1pvv_A_90	1pvv	A	94	106	ARVLSRYVDAIMA	HHHHTTT-SEEEE	aaaaaaababbbb
1rpx_C_57	1rpx	C	60	72	VDSLRPITDLPLD	HHHHGGG--S-EE	aaaaaaabaxxxx
1ujp_A_29	1ujp	A	36	48	VEEVLPYADLLEI	HHHHGGG-SSEEE	aaaaaaaxabbbb
1zpd_A_123	1zpd	A	125	137	LEMAKNITAAAEA	HHHHGGG-S-EEE	aaaaaaababbbx
3csu_C_88	3csu	C	92	104	ISVISTYVDAIVM	HHHHTTT-SEEEE	aaaaaaababbxb
5rub_A_173	5rub	A	180	191	CHAFWLGGDFIK.	HHHHTTT-SEEE.	aaaaaaababbb.

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a53_*_66	1a53	*	IGPINDOLE-3-GLYCEROL PHOSPHATE	L - 83
1duv_G_89	1duv	G	PSQNDELTA-(N'-SULPHODIAMINOPHOSPHINYL)-L-ORNITHINE	R - 106
1dvj_A_189	1dvj	A	UP66-AZA URIDINE 5'-MONOPHOSPHATE	I - 200
1dvj_A_189	1dvj	A	UP66-AZA URIDINE 5'-MONOPHOSPHATE	V - 201
1e4c_P_134	1e4c	P	ZNZINC ION	L - 152
1ej2_A_17	1ej2	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	R - 17
1ej2_A_17	1ej2	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	G - 18
1ej2_A_17	1ej2	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	H - 19
1ej2_A_17	1ej2	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	Q - 21
1ej2_A_17	1ej2	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 22
1f9a_A_14	1f9a	A	ATPADENOSINE-5'-TRIPHOSPHATE	K - 14
1f9a_A_14	1f9a	A	ATPADENOSINE-5'-TRIPHOSPHATE	G - 15
1f9a_A_14	1f9a	A	ATPADENOSINE-5'-TRIPHOSPHATE	H - 16
1f9a_A_14	1f9a	A	ATPADENOSINE-5'-TRIPHOSPHATE	V - 19
1ffr_A_375	1ffr	A	NAGN-ACETYL-D-GLUCOSAMINE	M - 388
1iow_*_163	1iow	*	ADPADENOSINE-5'-DIPHOSPHATE	E - 180
1iow_*_163	1iow	*	ADPADENOSINE-5'-DIPHOSPHATE	K - 181
1ml4_A_90	1ml4	A	PALN-(PHOSPHONACETYL)-L-ASPARTIC ACID	R - 107
1o6z_A_109	1o6z	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 119
1o6z_A_109	1o6z	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	D - 122
1o6z_A_109	1o6z	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 123
1o6z_A_109	1o6z	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	T - 138
1o94_A_239	1o94	A	FMNFLAVIN MONONUCLEOTIDE	T - 257
1pii_*_220	1pii	*	PO4PHOSPHATE ION	L - 234
1pii_*_220	1pii	*	PO4PHOSPHATE ION	I - 235
1ujp_A_29	1ujp	A	CITCITRIC ACID	E - 47

Clusters included in this Subclass

CLUSTER: HE.4.44

CLUSTER: HE.5.19

CLUSTER: HE.5.228

CLUSTER: HE.6.206

CLUSTER: HE.6.5

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