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Information on SUBCLASS 1.1.4
Subclass Accession number: 7020
Subclass: 1.1.4 PSSM
Type: EH beta-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 59

Average sequence ID (%) : 10.7 +/- 14.8
Average RMSD (Å) : 0.408 +/- 0.168

Consensus geometry
d (Å): 11 delta (°): 0-45 theta (°): 90-135 rho (°): 180-225
Consensus Sequence: XXXXp
(φψ)-conformation: bbpaa
Pattern: xxxx[dehknpqrst]x[adegknqrst]x[acfgilmvwy]
Conservation:0.217-0.657-1.1020.3341.047-1.5661.6230.116-0.012
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ak2_*_1251ak2   -128136EFSIPDSLLEEE--HHHHbxxbwaaaa
1aky_*_1141aky   -117125ELKVDDELLEEE--HHHHxxxbxaaaa
1aor_A_171aor   A2028VEEYDEELAEEE--HHHHbbbbxaaaa
1aqu_A_1241aqu   A127135YLCRNAKDVEEE--HHHHbbbbpaaaa
1cgt_*_171cgt   -1725IYQVFTDRFEEE--HHHHxbxbxaaaa
1cke_A_1431cke   A146154FLDASSEEREEE--HHHHbbbbxaaaa
1dqu_A_2121dqu   A212220KVLVPISEHEEE--HHHHxbxbpaaaa
1dxy_*_1871dxy   -187194.DYVSLEDL.EE--HHHH.bxbxaaaa
1dyt_A_401dyt   A4351FLRTTFANVEESS-HHHHxxxbbaaaa
1e2k_A_2021e2k   A205213LGALPEDRHEEE--HHHHbbbbwaaaa
1e4v_A_1051e4v   A108116EFDVPDELIEEE--HHHHxxxbxaaaa
1ex7_A_511ex7   A5158.NFVSVDEF.EE--HHHH.xxbxaaaa
1f8m_A_1981f8m   A198205.VLIPTQQH.EE--HHHH.bxbwaaaa
1foh_A_1131foh   A113120.VVLHQGRI.EE--HHHH.bbbxaaaa
1gqv_A_401gqv   A4351FLLTTFANVEESS-HHHHbxxbxaaaa
1h16_A_7041h16   A707715VNVMNREMLEEE--HHHHbbbbxaaaa
1igw_B_2021igw   B202209.VLVPTQEA.EE--HHHH.bxbwaaaa
1j99_A_1151j99   A118126YLMRNPRDVEEE--HHHHbbbbpaaaa
1jag_A_1881jag   A191199YLQASPQVCEEE--HHHHxxxbxaaaa
1jqe_A_1111jqe   A115123WHKETSSEYEE-S-HHHHbbxbxaaaa
1jqo_A_4521jqo   A454462DIRQESERHEEE--HHHHxbbbpaaaa
1jxh_A_481jxh   A5260VYRIEPDFVEEE--HHHHbbxbxaaaa
1k0i_A_971k0i   A97105VTVYGQTEVEEE--HHHHbbxbpaaaa
1k1x_A_2471k1x   A247255INLMTYSEYEEE--HHHHbbxbxaaaa
1k6d_A_941k6d   A95103VVLVPQGTLEEE--HHHHbbxbpaaaa
1kgd_A_7841kgd   A784791.YFVSHDQM.EE--HHHH.bxbxaaaa
1kht_A_1171kht   A120128VVETTGDEIEEE--HHHHbxbbxaaaa
1ki9_A_1171ki9   A120128VVETSGDEIEEE--HHHHbxbbxaaaa
1knq_A_1051knq   A109117YLKGDFDVIEEE--HHHHxxxbxaaaa
1l4u_A_971l4u   A99107YLEISAAEGEEE--HHHHxxxbxaaaa
1ls6_A_1241ls6   A127135YVARNAKDVEEE--HHHHbbbbpaaaa
1m7g_A_1331m7g   A137145YVDVPVEVAEEE--HHHHxxbbxaaaa
1n3b_B_1261n3b   B129137VVDVSPETQEEE--HHHHbxbbxaaaa
1nb0_A_351nb0   A3542.ANFPEQVV.EE--HHHH.xbbxaaaa
1nks_A_1181nks   A121129LLEADPKIIEEE--HHHHbxbbxaaaa
1nn5_A_1291nn5   A132140FLQLQLADAEEE--HHHHbxxbpaaaa
1noy_A_2661noy   A266273.SILDYLDL.EE--HHHH.xxbpaaaa
1np3_A_1781np3   A178186IIETTFKDEEEE--HHHHbxxbbaaaa
1nst_A_6981nst   A701709TILINPADREEE--HHHHbbbbpaaaa
1nth_A_201nth   A2027.EKCTQDDW.EE--HHHH.xxbxaaaa
1oe0_A_1491oe0   A152160YLRTSPEVAEEE--HHHHxxxbbaaaa
1p5z_B_1741p5z   B177185YLQATPETCEEE--HHHHbxxbxaaaa
1p6x_A_1771p6x   A181189VTTLNVEEHEEE--HHHHxxbbpaaaa
1pb1_A_4011pb1   A401408.KLLKCSEF.EE--HHHH.bxbxaaaa
1poi_A_971poi   A98106MEDYSQDVIEEE--HHHHbbbbxaaaa
1q44_A_1561q44   A159167YCCRNPKDMEEE--HHHHxbxbpaaaa
1qf9_A_1101qf9   A116124FFDCPEEVMEEE--HHHHbxxbxaaaa
1qmg_A_3021qmg   A303311TFATTLEQEEEE--HHHHbbxbbaaaa
1rdr_*_3881rdr   -389397HPVMPMKEIEEE--HHHHxwbxxaaaa
1rnf_A_421rnf   A4553FIHEDIWNIEE-S-HHHHbbbbxaaaa
1ujp_A_941ujp   A95103FLMTYLNPVEEE--HHHHbxxbxaaaa
1xim_A_501xim   A5058GITFHDDDLEEE-BHHHHbbbbxaaaa
1zin_*_1091zin   -112120HIDVRQDVLEEE--HHHHxxxbxaaaa
2ak3_A_1082ak3   A111119NLNVPFEVIEEE--HHHHbxbbwaaaa
2ayq_A_3402ayq   A340347.KVVSTIEL.EE--HHHH.bxbxaaaa
2bc2_A_1042bc2   A104112KAHSTALTAEEE-BHHHHxxxbxaaaa
2cb5_A_3002cb5   A300308YNNQPIDFLEEE--HHHHbbxbxaaaa
3adk_*_1143adk   -117125YVDAGPETMEEE--HHHHbxxbxaaaa
4tmk_A_1354tmk   A138146YLDVTPEVGEEE--HHHHxxxbxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aky_*_1141aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE L - 118
1aky_*_1141aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE R - 128
1aky_*_1141aky   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE I - 129
1aqu_A_1241aqu   A     A3PADENOSINE-3'-5'-DIPHOSPHATE R - 130
1aqu_A_1241aqu   A     A3PADENOSINE-3'-5'-DIPHOSPHATE D - 134
1aqu_A_1241aqu   A     A3PADENOSINE-3'-5'-DIPHOSPHATE V - 137
1aqu_A_1241aqu   A     A3PADENOSINE-3'-5'-DIPHOSPHATE S - 138
1aqu_A_1241aqu   A     A3PADENOSINE-3'-5'-DIPHOSPHATE Y - 141
1aqu_A_1241aqu   A     A3PADENOSINE-3'-5'-DIPHOSPHATE F - 142
1aqu_A_1241aqu   A     ESTESTRADIOL F - 142
1dxy_*_1871dxy   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 191
1dyt_A_401dyt   A     CITCITRIC ACID Q - 40
1dyt_A_401dyt   A     CITCITRIC ACID N - 41
1dyt_A_401dyt   A     CITCITRIC ACID L - 44
1dyt_A_401dyt   A     CITCITRIC ACID R - 45
1dyt_A_401dyt   A     CITCITRIC ACID T - 46
1dyt_A_401dyt   A     CITCITRIC ACID T - 47
1dyt_A_401dyt   A     CITCITRIC ACID N - 50
1dyt_A_401dyt   A     CITCITRIC ACID V - 51
1dyt_A_401dyt   A     CITCITRIC ACID N - 53
1dyt_A_401dyt   A     CITCITRIC ACID V - 54
1e2k_A_2021e2k   A     TMC1-[4-HYDROXY-5-(HYDROXYMETHYL)BICYCLO[3.1.0]HEX-2-YL]-5-METHYLPYRIMIDINE-2,4(1H,3H)-DIONE L - 217
1e4v_A_1051e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE F - 109
1e4v_A_1051e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE R - 119
1e4v_A_1051e4v   A     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE I - 120
1foh_A_1131foh   A     IPHPHENOL V - 113
1foh_A_1131foh   A     IPHPHENOL V - 114
1foh_A_1131foh   A     FADFLAVIN-ADENINE DINUCLEOTIDE Q - 117
1foh_A_1131foh   A     FADFLAVIN-ADENINE DINUCLEOTIDE E - 121
1gqv_A_401gqv   A     ACTACETATE ION L - 44
1gqv_A_401gqv   A     ACTACETATE ION T - 46
1gqv_A_401gqv   A     ACTACETATE ION T - 47
1gqv_A_401gqv   A     ACTACETATE ION N - 50
1gqv_A_401gqv   A     ACTACETATE ION V - 51
1gqv_A_401gqv   A     ACTACETATE ION V - 54
1igw_B_2021igw   B     HGMERCURY (II) ION P - 205
1igw_B_2021igw   B     HGMERCURY (II) ION Q - 207
1igw_B_2021igw   B     HGMERCURY (II) ION E - 208
1igw_B_2021igw   B     HGMERCURY (II) ION L - 218
1igw_B_2021igw   B     HGMERCURY (II) ION C - 219
1igw_B_2021igw   B     HGMERCURY (II) ION A - 220
1igw_B_2021igw   B     HGMERCURY (II) ION V - 222
1igw_B_2021igw   B     HGMERCURY (II) ION T - 223
1j99_A_1151j99   A     AND3-BETA-HYDROXY-5-ANDROSTEN-17-ONE F - 133
1j99_A_1151j99   A     AND3-BETA-HYDROXY-5-ANDROSTEN-17-ONE W - 134
1jqe_A_1111jqe   A     SAHS-ADENOSYL-L-HOMOCYSTEINE E - 118
1jqe_A_1111jqe   A     SAHS-ADENOSYL-L-HOMOCYSTEINE T - 119
1jqe_A_1111jqe   A     SAHS-ADENOSYL-L-HOMOCYSTEINE S - 120
1jqe_A_1111jqe   A     SAHS-ADENOSYL-L-HOMOCYSTEINE S - 121
1k0i_A_971k0i   A     PHBP-HYDROXYBENZOIC ACID V - 99
1k0i_A_971k0i   A     FADFLAVIN-ADENINE DINUCLEOTIDE Q - 102
1kgd_A_7841kgd   A     FMTFORMIC ACID Y - 784
1l4u_A_971l4u   A     ADPADENOSINE-5'-DIPHOSPHATE L - 100
1l4u_A_971l4u   A     PTPLATINUM (II) ION A - 104
1l4u_A_971l4u   A     ADPADENOSINE-5'-DIPHOSPHATE E - 106
1l4u_A_971l4u   A     ADPADENOSINE-5'-DIPHOSPHATE R - 110
1ls6_A_1241ls6   A     A3PADENOSINE-3'-5'-DIPHOSPHATE Y - 139
1ls6_A_1241ls6   A     NPOP-NITROPHENOL F - 142
1m7g_A_1331m7g   A     AV2ADENOSINE-5'-DIPHOSPHATE-2',3'-VANADATE V - 138
1n3b_B_1261n3b   B     MSESELENOMETHIONINE P - 134
1n3b_B_1261n3b   B     MSESELENOMETHIONINE E - 135
1n3b_B_1261n3b   B     MSESELENOMETHIONINE Q - 137
1n3b_B_1261n3b   B     MSESELENOMETHIONINE L - 138
1n3b_B_1261n3b   B     MSESELENOMETHIONINE K - 139
1n3b_B_1261n3b   B     MSESELENOMETHIONINE R - 140
1nb0_A_351nb0   A     MGMAGNESIUM ION A - 35
1nb0_A_351nb0   A     ADPADENOSINE-5'-DIPHOSPHATE A - 35
1nb0_A_351nb0   A     MGMAGNESIUM ION N - 36
1nb0_A_351nb0   A     ADPADENOSINE-5'-DIPHOSPHATE N - 36
1nst_A_6981nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE D - 708
1nst_A_6981nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE Y - 711
1nst_A_6981nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE S - 712
1nst_A_6981nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE W - 713
1nst_A_6981nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE Q - 715
1nst_A_6981nst   A     A3PADENOSINE-3'-5'-DIPHOSPHATE H - 716
1oe0_A_1491oe0   A     TTPTHYMIDINE-5'-TRIPHOSPHATE L - 153
1oe0_A_1491oe0   A     TTPTHYMIDINE-5'-TRIPHOSPHATE R - 167
1oe0_A_1491oe0   A     MGMAGNESIUM ION R - 167
1p5z_B_1741p5z   B     ADPADENOSINE-5'-DIPHOSPHATE R - 188
1p5z_B_1741p5z   B     ADPADENOSINE-5'-DIPHOSPHATE I - 189
1p5z_B_1741p5z   B     ADPADENOSINE-5'-DIPHOSPHATE L - 191
1p5z_B_1741p5z   B     MO3MAGNESIUM ION, 3 WATERS COORDINATED R - 192
1p5z_B_1741p5z   B     ADPADENOSINE-5'-DIPHOSPHATE R - 192
1qf9_A_1101qf9   A     ADPADENOSINE-5'-DIPHOSPHATE R - 127
1qf9_A_1101qf9   A     ALFTETRAFLUOROALUMINATE ION L - 128
1qf9_A_1101qf9   A     ADPADENOSINE-5'-DIPHOSPHATE L - 128
1qf9_A_1101qf9   A     ADPADENOSINE-5'-DIPHOSPHATE K - 130
1qf9_A_1101qf9   A     ALFTETRAFLUOROALUMINATE ION R - 131
1qf9_A_1101qf9   A     MGMAGNESIUM ION R - 131
1qf9_A_1101qf9   A     ADPADENOSINE-5'-DIPHOSPHATE R - 131
1qf9_A_1101qf9   A     C5PCYTIDINE-5'-MONOPHOSPHATE R - 131
1qmg_A_3021qmg   A     DMV2,3-DIHYDROXY-VALERIANIC ACID E - 311
1qmg_A_3021qmg   A     MNMANGANESE (II) ION E - 311
1qmg_A_3021qmg   A     DMV2,3-DIHYDROXY-VALERIANIC ACID D - 315
1qmg_A_3021qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE D - 315
1qmg_A_3021qmg   A     MNMANGANESE (II) ION D - 315
1qmg_A_3021qmg   A     MNMANGANESE (II) ION I - 316
1qmg_A_3021qmg   A     DMV2,3-DIHYDROXY-VALERIANIC ACID G - 318
1qmg_A_3021qmg   A     DMV2,3-DIHYDROXY-VALERIANIC ACID E - 319
1qmg_A_3021qmg   A     MNMANGANESE (II) ION E - 319
1xim_A_501xim   A     XYLD-XYLITOL H - 54
1zin_*_1091zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE R - 123
1zin_*_1091zin   *     AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE L - 124
4tmk_A_1354tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE R - 149
4tmk_A_1354tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE A - 150
4tmk_A_1354tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE A - 152
4tmk_A_1354tmk   A     T5AP1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE R - 153
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gqv_A_401gqv   A P-1P-1 PERIPHERAL SUBSITE FOR CHAIN AQ - 40
1gqv_A_401gqv   A AC1ACT BINDING SITE FOR CHAIN AT - 46
1gqv_A_401gqv   A AC1ACT BINDING SITE FOR CHAIN AN - 50
1oe0_A_1491oe0   A AC1TTP BINDING SITE FOR CHAIN AR - 167

Clusters included in this Subclass
CLUSTER: EH.1.6
CLUSTER: EH.2.7
CLUSTER: EH.3.5