ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 3.8.1

Subclass Accession number: 8356
Subclass: 3.8.1

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Consensus coordinates:

Number of loops: 37

Average sequence ID (%) : 15.5 +/- 21.2
Average RMSD (Å) : 0.857 +/- 0.166

Consensus geometry

d (Å): 9

delta (°): 90-135

theta (°): 135-180

rho (°): 90-135

Consensus Sequence:	pXXXhXh
(φψ)-conformation:	aabapbb

Pattern:	[acfilvw]	[adekqrst]	x	[ailmvwy]	[aegknqrst]	[adegknqrst]	x	x	[ehknpqrst]	[afgiltv]	x	[fhilv]	x
Conservation:	0.203	-0.152	-0.030	0.520	0.385	0.213	-1.553	-0.467	-0.832	-0.146	-0.362	2.773	-0.553

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a53_*_93	1a53	-	96	108	LRKIASSVSIPIL	HHHHHHH--S-EE	aaaaaaababpbb
1aj0_*_71	1aj0	-	82	94	VEAIAQRFEVWIS	HHHHHHH---EEE	aaaaaaabaxxbb
1aop_*_375	1aop	-	379	391	LLEIAKIHKGDFR	HHHHHHH-SSEEE	aaaaaaaxabbbb
1bfd_*_500	1bfd	-	506	518	SLQEALSAKGPVL	HHHHHHH-SS-EE	aaaaaaaxabxbb
1bqq_M_137	1bqq	M	148	160	FRVWESATPLRFR	HHHHHHHSS-EEE	aaaaaaababbbb
1chr_A_228	1chr	A	231	243	LRRLSDNNRVAIM	HHHHHHHS-SEEE	aaaaaaaxapxxb
1cxv_A_110	1cxv	A	121	133	FKVWSDVTPLNFT	HHHHHTTSS-EEE	aaaaaaabaxbbb
1eua_A_98	1eua	A	100	112	LLKAATEGTIPLI	HHHHHHHSSS-EE	aaaaaaaxabxbb
1fbl_*_127	1fbl	-	138	150	FQLWSNVSPLTFT	HHHHHTTSS-EEE	aaaaaaabaxbbb
1geh_A_261	1geh	A	267	279	IRDLAADYGLAIH	HHHHHHHTT-EEE	aaaaaaaxaxxxx
1gkd_A_134	1gkd	A	145	157	FALWSAVTPLTFT	HHHHHTTSS-EEE	aaaaaaabaxbbb
1gs5_A_17	1gs5	A	27	39	LVNYRESHQRPLV	HHHHHTT--S-EE	aaaaaaabaxxxb
1h5y_A_62	1h5y	A	69	81	VKRVAEAVSIPVL	HHHHHHH-SS-EE	aaaaaaabaxpbb
1hfc_*_127	1hfc	-	138	150	FQLWSNVTPLTFT	HHHHHTTSS-EEE	aaaaaaabaxbbb
1hp1_A_123	1hp1	A	126	138	LRQQEKWAKFPLL	HHHHHHH-SS-EE	aaaaaaaxabxbb
1hv5_A_127	1hv5	A	138	150	LQVWSEVTPLTFT	HHHHHTTSS-EEE	aaaaaaabaxbbb
1hy7_A_110	1hy7	A	121	133	LKVWEEVTPLTFS	HHHHHTTSS-EEE	aaaaaaabaxbbb
1i4n_A_92	1i4n	A	94	106	VRAARNLTCRPIL	HHHHHTT--S-EE	aaaaaaabaxpbx
1i76_A_106	1i76	A	117	129	FELWSVASPLIFT	HHHHHTTSS-EEE	aaaaaaabapbbb
1jk3_A_127	1jk3	A	138	150	FQVWSNVTPLKFS	HHHHHTTSS-EEE	aaaaaaabaxbbb
1ka9_F_60	1ka9	F	67	79	VARVAERVFIPLT	HHHHHTT--S-EE	aaaaaaababpbb
1l6j_A_134	1l6j	A	145	157	FALWSAVTPLTFT	HHHHHHTSS-EEE	aaaaaaabaxbbb
1l6s_A_252	1l6s	A	255	267	VRELRERTELPIG	HHHHHTT-SS-EE	aaaaaaabaxxbx
1m3u_A_185	1m3u	A	188	200	AKRITEALAIPVI	HHHHHHH-SS-EE	aaaaaaaxaxwbb
1mdl_*_229	1mdl	-	232	244	HQRIQSKLNVPVQ	HHHHHHT-SS-EE	aaaaaaabaxxxb
1muc_A_232	1muc	A	235	247	QVRLNQRTPAPIM	HHHHHHH-SS-EE	aaaaaaaxabxxb
1mxs_A_110	1mxs	A	112	124	ILEAGVDSEIPLL	HHHHHHH-SS-EE	aaaaaaaxaxxbb
1oao_A_360	1oao	A	360	372	ISAVAECYHTRII	HHHHHTTSS-EEE	aaaaaaabapxxb
1oth_A_145	1oth	A	148	160	LDTLAKEASIPII	HHHHHHH-SS-EE	aaaaaaaxabpbb
1oy0_A_203	1oy0	A	206	218	ATQITGKLTIPTV	HHHHHHH-SS-EE	aaaaaaaxaxxbb
1p0k_A_166	1p0k	A	170	182	IEQICSRVSVPVI	HHHHHHH-SS-EE	aaaaaaaxaxxbb
1pdz_*_302	1pdz	-	305	317	WSKMTSGTTIQIV	HHHHHHH-SSEEE	aaaaaaababxbx
1qib_A_110	1qib	A	121	133	FQVWSDVTPLRFS	HHHHHTSSS-EEE	aaaaaaabapbbb
1sml_A_93	1sml	A	93	105	VAELKRRTGAKVA	HHHHHHHSS-EEE	aaaaaaabaxbbb
1ukz_*_29	1ukz	-	33	45	CEKLVKDYSFVHL	HHHHHHHSS-EEE	aaaaaaabaxbxb
2ay1_A_233	2ay1	A	240	252	TRLIASRIPEVLI	HHHHHHH-SSEEE	aaaaaaaxabbbb
3pmg_A_339	3pmg	A	340	352	LDRVANATKIALY	HHHHHHTSSS-EE	aaaaaaabaxxbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a53_*_93	1a53	*	IGPINDOLE-3-GLYCEROL PHOSPHATE	K - 110
1aj0_*_71	1aj0	*	PH22-AMINO-6-HYDROXYMETHYL-7,8-DIHYDRO-3H-PTERIDIN-4-ONE	D - 96
1gkd_A_134	1gkd	A	CACALCIUM ION	V - 136
1gkd_A_134	1gkd	A	CACALCIUM ION	D - 139
1gkd_A_134	1gkd	A	CACALCIUM ION	R - 143
1gs5_A_17	1gs5	A	NLGN-ACETYL-L-GLUTAMATE	H - 42
1gs5_A_17	1gs5	A	ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER	H - 42
1h5y_A_62	1h5y	A	PO4PHOSPHATE ION	G - 83
1h5y_A_62	1h5y	A	GOLGLYCEROL	G - 83
1hv5_A_127	1hv5	A	CPS3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE	P - 146
1hv5_A_127	1hv5	A	CPS3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE	L - 147
1i4n_A_92	1i4n	A	SULSULFATE ANION	K - 108
1l6s_A_252	1l6s	A	DSB4,7-DIOXOSEBACIC ACID	Y - 269
1l6s_A_252	1l6s	A	DSB4,7-DIOXOSEBACIC ACID	Q - 270
1m3u_A_185	1m3u	A	KPLKETOPANTOATE	I - 202
1muc_A_232	1muc	A	MNMANGANESE (II) ION	M - 247
1oao_A_360	1oao	A	GOLGLYCEROL	A - 362
1oao_A_360	1oao	A	GOLGLYCEROL	V - 363
1oao_A_360	1oao	A	GOLGLYCEROL	C - 366
1ukz_*_29	1ukz	*	ADPADENOSINE-5'-DIPHOSPHATE	K - 29
1ukz_*_29	1ukz	*	AMPADENOSINE MONOPHOSPHATE	K - 29
1ukz_*_29	1ukz	*	ADPADENOSINE-5'-DIPHOSPHATE	G - 30
1ukz_*_29	1ukz	*	ADPADENOSINE-5'-DIPHOSPHATE	T - 31
1ukz_*_29	1ukz	*	ADPADENOSINE-5'-DIPHOSPHATE	Q - 32
1ukz_*_29	1ukz	*	AMPADENOSINE MONOPHOSPHATE	S - 46
2ay1_A_233	2ay1	A	PLPPYRIDOXAL-5'-PHOSPHATE	A - 254
2ay1_A_233	2ay1	A	PLPPYRIDOXAL-5'-PHOSPHATE	S - 255

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1oao_A_360	1oao	A	BC3GOL BINDING SITE FOR CHAIN A	A - 362

Clusters included in this Subclass