Information on SUBCLASS 5.2.1 |
Subclass Accession number: 3990
Subclass: 5.2.1 Type: AR beta-beta link DB: ArchDB95 Image coordinates: Consensus coordinates: |
Number of loops: 34 Average sequence ID (%) : 17.4 +/- 21.2 Average RMSD (Å) : 0.871 +/- 0.242 Consensus geometry
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Consensus Sequence: | XhXXXppXh |
(φψ)-conformation: | bbpaapabb |
Pattern: | x | x | [afilv] | [dgpst] | x | [adgkrst] | [cdeknqrst] | [adeknst] | x | [acfilmtv] | x |
Conservation: | -0.999 | -0.394 | 0.579 | 1.929 | -1.044 | 0.902 | -0.077 | 0.613 | -0.998 | 0.576 | -1.086 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1a3q_A_120 | 1a3q | A | 122 | 132 | VSVGPKDMTAQ | EEE-SS--EEE | bbxpaaxabbb |
1azc_A_19 | 1azc | A | 20 | 30 | MVVDKSCKQFT | EEEETT-SEEE | bbxxaaxabbb |
1bdq_A_18 | 1bdq | A | 22 | 32 | ALLDTGADDSI | EEE-TT-SSEE | bxxbaababxb |
1bxo_A_203 | 1bxo | A | 210 | 220 | GIADTGTTLLL | EEE-TT-SSEE | bbxbaababxb |
1bxo_A_26 | 1bxo | A | 30 | 40 | LNFDTGSADLW | EEEETT---EE | bxxbaababbb |
1c6y_A_18 | 1c6y | A | 22 | 32 | ALIDTGADDTV | EEE-TT-SSEE | bxxbaaxabbb |
1cfb_*_661 | 1cfb | - | 665 | 675 | EKVPNTDSSFV | EEEETT-SEEE | blxpaaxabbx |
1cfb_*_763 | 1cfb | - | 766 | 776 | NIFDWRQNNIV | EE--TT--EEE | xbaxaaxabbb |
1cuo_A_19 | 1cuo | A | 20 | 30 | ISVPASCAEFT | EEEETT-SEEE | bbbxaaxabbb |
1cv8_*_148 | 1cv8 | - | 148 | 158 | MTQDAKNNVIP | EEEETT--EEE | bbbxaababxx |
1ezv_A_246 | 1ezv | A | 249 | 259 | RLRDDTLPKAW | EEE-TTSSSEE | bapbaaxabbb |
1fkn_A_25 | 1fkn | A | 29 | 39 | ILVDTGSSNFA | EEEETT---EE | bxxbaababxb |
1fna_*_46 | 1fna | - | 48 | 58 | FTVPGSKSTAT | EEEETT--EEE | bbbpaababbx |
1fnf_*_1190 | 1fnf | - | 1192 | 1202 | EVVHADQSSCT | EEE-TT--EEE | bbbxaaxabbb |
1fnf_*_1281 | 1fnf | - | 1283 | 1293 | LSISPSDNAVV | EEE-TT--EEE | bbbpaababbb |
1fnf_*_1371 | 1fnf | - | 1373 | 1383 | DRVPHSRNSIT | EEEETT--EEE | bbbxaaxabbb |
1hrn_A_25 | 1hrn | A | 29 | 39 | VVFDTGSSNVW | EEEETT---EE | bxxbaababbb |
1htr_B_25 | 1htr | B | 29 | 39 | VLFDTGSSNLW | EEEETT---EE | bxxbaababbb |
1j71_A_207 | 1j71 | A | 215 | 225 | VVLDSGTTITY | EEE-TT-SSEE | bxxxaababbb |
1lf2_A_204 | 1lf2 | A | 211 | 221 | CIVDSGTSAIT | EEE-TT--SEE | bxxbaababxb |
1lf2_A_27 | 1lf2 | A | 31 | 41 | FILDTGSANLW | EEEETT---EE | bxxbaababbb |
1miq_A_204 | 1miq | A | 211 | 221 | VIVDSGTTTIT | EEE-TTBSSEE | bxbbaaxabxb |
1oew_A_28 | 1oew | A | 32 | 42 | LDFDTGSSDLW | EEEETT---EE | bxxbaababbb |
1ooa_A_120 | 1ooa | A | 123 | 133 | VTAGPKDMVVG | EEE-SS--EEE | bbbpaaxaxbb |
1pfz_A_204 | 1pfz | A | 211 | 221 | CIVDSGTSAIT | EEE-TTBSSEE | bxxbaababbx |
1pl3_A_44 | 1pl3 | A | 48 | 58 | VVAPIASKWIG | EEEETT--EEE | bbbpaaxabbb |
1pxv_A_367 | 1pxv | A | 367 | 377 | SIQDADSSLLH | EEEETT--EEE | bbbxaabaxxx |
1qpx_A_8 | 1qpx | A | 9 | 19 | AVFDGSEKSMT | EEEETTSSEEE | bbxxaababbb |
1qs8_A_204 | 1qs8 | A | 211 | 221 | VIVDSGTTTIT | EEE-TT-SSEE | bxxbaababbb |
1rkr_A_19 | 1rkr | A | 20 | 30 | ITVSKSCKQFT | EEEETT-SEEE | bbxxaaxabbb |
1svb_*_161 | 1svb | - | 163 | 173 | ASFTISSEKTI | EEEBTTB-EEE | bbbbaababbb |
1ten_*_847 | 1ten | - | 849 | 859 | IDLTEDENQYS | EEEETT--EEE | bbxxaaxabbb |
1ygs_*_333 | 1ygs | - | 339 | 349 | FKVPSSCPIVT | EEEETT-SEEE | xbxxaababbb |
3cms_*_25 | 3cms | - | 29 | 39 | VLFDTGSSDFW | EEEETT---EE | bxxbaabaxbb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1bdq_A_18 | 1bdq | A | IM1NULL | D - 29 |
1bxo_A_26 | 1bxo | A | CICCATALYTIC RESIDUES | D - 33 |
1bxo_A_203 | 1bxo | A | CICCATALYTIC RESIDUES | D - 213 |
1oew_A_28 | 1oew | A | CATCATALYTIC SITE | D - 35 |
1oew_A_28 | 1oew | A | AC1SER BINDING SITE FOR CHAIN A | G - 37 |
1pfz_A_204 | 1pfz | A | ASPCATALYTIC RESIDUES IN THE MATURE ENZYME. | D - 214 |
Clusters included in this Subclass |
CLUSTER: AR.3.68 |
CLUSTER: AR.4.50 |
CLUSTER: AR.5.164 |
CLUSTER: AR.5.5 |
CLUSTER: AR.6.90 |