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Information on SUBCLASS 6.1.1
Subclass Accession number: 402
Subclass: 6.1.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 50

Average sequence ID (%) : 15.0 +/- 15.1
Average RMSD (Å) : 0.748 +/- 0.307

Consensus geometry
d (Å): 13 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: XXchXXpphX
(φψ)-conformation: aalbpaaabb
Pattern: x[afilmpvy]x[adegknqrst]x[acfiklmtv][ADEGKNQRS][acfiklv][dehknpqrst]x[adegknqrs][cdehknqrstwy][hilmvy]x[afikltv]x
Conservation:-1.1370.292-0.460-0.421-0.809-0.4911.7390.1290.062-0.7060.6790.0902.309-1.4060.130-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1aln_*_2391aln   -245260ILLNLKGYDYPDIQRAHHHHHTT--GGGEEEEaaaaaagxbaaaxabb
1auo_A_811auo   A96111EAQKRTGIDASRIFLAHHHHHTT--GGGEEEEaaaaaavxxaaabbbb
1bu6_O_491bu6   O6277EVLTKADISSDQIAAIHHHHHHT--GGGEEEEaaaaaavbxaaaxabb
1dpt_A_181dpt   A2540AAASILGKPADRVNVTHHHHHH-S-GGG-EEEaaaaaavbwaaabbbb
1dpt_A_701dpt   A8398FLTKELALGQDRILIRHHHHHHT--GGGEEEEaaaaaalbxaaabbbb
1eg5_A_481eg5   A5267KVAKVLGVSPSEIFFTHHHHHHTS-GGGEEEEaaaaaavbxaaabbbb
1elu_A_541elu   A7085ALAETFNVDPNTITITHHHHHTTS-GGGEEEEaaaaaalbxaaabbxb
1euv_B_461euv   B5166AFAKRQGKEMDSLRFLHHHHHTT--GGGEEEEaaaaaavbxaaabbbb
1ez4_A_1641ez4   A173186ALGKQFNVDPRSVD..HHHHHHT--GGGEE..aaaaaalbpaaabx..
1f08_A_2431f08   A249264LMANMLNVREECLMLQHHHHHHT--GGGEEEEaaaaaalbxaaabbbb
1feh_A_3351feh   A335350YYPSISGLDPKNVFTVHHHHTT---GGGEEEEaaaaaavxxaaaxbbb
1fg7_A_611fg7   A6681NYAQYAGVKPEQVLVSHHHHHHTS-GGGEEEEaaaaaavbxaaabbbb
1g99_A_1811g99   A190205RAALMLGKPAEETKIIHHHHHHTS-GGG-EEEaaaaaavbxaaabbbb
1gd0_A_181gd0   A2540QLAQATGKPPQYIAVHHHHHHH---GGG-EEEaaaaaavxxaaaxbbb
1gd0_A_691gd0   A8297LLAERLRISPDRVYINHHHHHH---GGGEEEEaaaaaavbxaaabbbx
1gv1_A_1441gv1   A154167FIAMELGVSMQDIN..HHHHHH---GGGEE..aaaaaavbxaaabb..
1gyx_A_141gyx   A2742VIIRHLNSKDSSISIAHHHHHHT--GGG-EEEaaaaaalbbaaabbbb
1hfo_A_181hfo   A2540LVGNILSKPGSYVAVHHHHHHHT--GGG-EEEaaaaaavbxaaaxbbb
1hfo_A_691hfo   A8297HLNTKLGIPKNRMYIHHHHHHH---GGGEEEEaaaaaavxxaaabbbx
1hnj_A_511hnj   A6176RAIEMAGIEKDQIGLIHHHHHHT--GGG--EEaaaaaavbxaaaxabb
1iat_A_2491iat   A250264TKVKEFGIDPQNMFE.HHHHHHT--GGGEEE.aaaaaagxpaaabbx.
1iv3_A_1091iv3   A115130SLSRLMRLPQDRIGLTHHHHHHT--GGGEEEEaaaaaalbxaaabbbb
1j5w_A_881j5w   A94109ESLEYLGINLKEHDIRHHHHHTT--TTTS-EEaaaaaavbxaaabxbb
1jj2_O_41jj2   O923LAADVLDVGKNRVWF.HHHHHTTS-GGGEEE.aaaaaalbxaaaxbb.
1jj2_W_251jj2   W3650HLAKHFSVDEDAVRL.HHHHHTT--GGGEEE.aaaaaalbxaaaxbb.
1l1q_A_1311l1q   A138153ELCETAGVKPENIYINHHHHHTT--GGGEEEEaaaaaagxxaaabbbb
1lc5_A_131lc5   A1428EPATVLGISPDQLLD.HHHHHHTS-GGGSEE.aaaaaavbxaaaxbx.
1lc5_A_621lc5   A6782ALARHHQVPASWILAGHHHHHHTS-GGGEEEEaaaaaalbxaaabbxb
1lld_A_1511lld   A160173LIAQQTGVNVKNVH..HHHHHHT--GGGEE..aaaaaavbxaaabb..
1lm8_B_241lm8   B3045IVEGILKRPPDEQRLYHHHHHH---GGGEEEEaaaaaalbwaaabbbb
1mww_A_721mww   A85100ELEYKLGIRAHDVEITHHHHHH---GGGEEEEaaaaaavxpaaabbbb
1n62_B_2421n62   B248263VVSLISGLPEHKIHVIHHHHHH---GGGEEEEaaaaaavxxaaabbxb
1n62_B_5321n62   B539554IIATELGIPADDIMIEHHHHHHT--GGGEEEEaaaaaavbwaaabbbb
1n62_B_5761n62   B594608IAAHMLEVHEGDLEW.HHHHHHTS-GGGEEE.aaaaaalbxaaabbx.
1o22_A_1351o22   A135150YFFESKGWNPGEYTFSHHHHHHT--GGGEEEEaaaaaavbxaaabbbb
1ogw_A_231ogw   A2943KIQDKEGIPPDQQRL.HHHHHH---GGGEEE.aaaaaavxpaaaxbb.
1ono_A_2261ono   A234249EARWLFNASASQMEVLHHHHHHT--GGGEEEEaaaaaalbxaaabbbb
1otf_A_141otf   A2742AMANSLDAPLERVRVLHHHHHHT--GGG-EEEaaaaaalbpaaaxbbb
1p1c_A_1931p1c   A194209PALLEAGFQRENICTEHHHHHHT--GGGEEEEaaaaaagxbaaabbbb
1p3w_A_421p3w   A5772QIADLVGADPREIVFTHHHHHHT--GGGEEEEaaaaaavbxaaaxbxb
1pf5_A_491pf5   A6277ATLAAAGCTFDDIIDVHHHHTTT--GGGEEEEaaaaaavbbaaaxabb
1qlm_A_1471qlm   A152167HVADECGVDPENLYLLHHHHHHTS-GGGEEEEaaaaaavbxaaabbbb
1qu9_A_461qu9   A5974AIVEAAGLKVGDIVKTHHHHHTT--GGGEEEEaaaaaavbbaaaxabb
1ryb_A_701ryb   A7691PLAAYYQVPLRHILLIHHHHHTT--GGGEEEEaaaaaalxxaaaxxbb
1s0y_A_141s0y   A2742VISEATGEPRENIFFVHHHHHH---GGG-EEEaaaaaavxxaaabbbb
1s0y_B_141s0y   B2742VTNKSIGSDPKIINVLHHHHHH---GGG-EEEaaaaaavxxaaabbbb
1sml_A_601sml   A6580DNMKARGVTPRDLRLIHHHHHTT--GGGEEEEaaaaaavbxaaaxabb
1szw_A_551szw   A6175ALAKFLKIHAREVSF.HHHHHTT--GGGEEE.aaaaaalbpaaabbb.
3pro_C_1373pro   C142157DFVALSGADSAQVRIEHHHHHHT--TTTEEEEaaaaaavxxaaabbxb
7mdh_A_1997mdh   A208221QLALKAGVFYDKVS..HHHHHTTS-GGGEE..aaaaaalbxaaabb..
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bu6_O_491bu6   O     GOLGLYCEROL N - 81
1eg5_A_481eg5   A     MSESELENOMETHIONINE K - 48
1eg5_A_481eg5   A     MSESELENOMETHIONINE A - 49
1eg5_A_481eg5   A     MSESELENOMETHIONINE R - 50
1eg5_A_481eg5   A     MSESELENOMETHIONINE E - 51
1eg5_A_481eg5   A     MSESELENOMETHIONINE K - 52
1eg5_A_481eg5   A     MSESELENOMETHIONINE V - 53
1eg5_A_481eg5   A     MSESELENOMETHIONINE V - 56
1eg5_A_481eg5   A     MSESELENOMETHIONINE L - 57
1eg5_A_481eg5   A     MSESELENOMETHIONINE F - 66
1ez4_A_1641ez4   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE S - 164
1ez4_A_1641ez4   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 165
1ez4_A_1641ez4   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 169
1feh_A_3351feh   A     HC12 IRON/2 SULFUR/5 CARBONYL/2 WATER INORGANIC CLUSTER V - 352
1feh_A_3351feh   A     HC12 IRON/2 SULFUR/5 CARBONYL/2 WATER INORGANIC CLUSTER M - 353
1fg7_A_611fg7   A     MSESELENOMETHIONINE Y - 70
1fg7_A_611fg7   A     MSESELENOMETHIONINE L - 79
1fg7_A_611fg7   A     MSESELENOMETHIONINE V - 80
1g99_A_1811g99   A     ADPADENOSINE-5'-DIPHOSPHATE H - 208
1g99_A_1811g99   A     ADPADENOSINE-5'-DIPHOSPHATE L - 209
1gd0_A_181gd0   A     CITCITRIC ACID H - 40
1gd0_A_181gd0   A     CITCITRIC ACID V - 42
1gd0_A_691gd0   A     CITCITRIC ACID N - 97
1gd0_A_691gd0   A     CITCITRIC ACID Y - 99
1gyx_A_141gyx   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID S - 34
1gyx_A_141gyx   A     EPE4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID S - 38
1iv3_A_1091iv3   A     MGMAGNESIUM ION K - 132
1j5w_A_881j5w   A     MSESELENOMETHIONINE Y - 98
1j5w_A_881j5w   A     MSESELENOMETHIONINE L - 99
1lld_A_1511lld   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 152
1mww_A_721mww   A     GLUGLUTAMIC ACID E - 98
1n62_B_5321n62   B     MCNPTERIN CYTOSINE DINUCLEOTIDE H - 532
1n62_B_5321n62   B     MCNPTERIN CYTOSINE DINUCLEOTIDE T - 535
1n62_B_5321n62   B     MCNPTERIN CYTOSINE DINUCLEOTIDE Y - 536
1n62_B_5321n62   B     MCNPTERIN CYTOSINE DINUCLEOTIDE I - 539
1o22_A_1351o22   A     MSESELENOMETHIONINE Y - 135
1o22_A_1351o22   A     MSESELENOMETHIONINE F - 136
1o22_A_1351o22   A     MSESELENOMETHIONINE F - 137
1o22_A_1351o22   A     MSESELENOMETHIONINE E - 138
1o22_A_1351o22   A     MSESELENOMETHIONINE P - 144
1o22_A_1351o22   A     MSESELENOMETHIONINE T - 148
1o22_A_1351o22   A     MSESELENOMETHIONINE F - 149
1ogw_A_231ogw   A     LEF(4S)-5-FLUORO-L-LEUCINE I - 23
1ogw_A_231ogw   A     LEF(4S)-5-FLUORO-L-LEUCINE V - 26
1ogw_A_231ogw   A     LEF(4S)-5-FLUORO-L-LEUCINE K - 27
1ogw_A_231ogw   A     LEF(4S)-5-FLUORO-L-LEUCINE I - 30
1ogw_A_231ogw   A     LEF(4S)-5-FLUORO-L-LEUCINE L - 43
1ono_A_2261ono   A     MW3MANGANESE ION, 3 WATERS COORDINATED N - 227
1ono_A_2261ono   A     MW3MANGANESE ION, 3 WATERS COORDINATED K - 228
1ono_A_2261ono   A     MW3MANGANESE ION, 3 WATERS COORDINATED E - 231
1pf5_A_491pf5   A     HGMERCURY (II) ION A - 67
1pf5_A_491pf5   A     HGMERCURY (II) ION G - 68
1pf5_A_491pf5   A     HGMERCURY (II) ION C - 69
1pf5_A_491pf5   A     HGMERCURY (II) ION T - 70
1pf5_A_491pf5   A     HGMERCURY (II) ION D - 73
1qlm_A_1471qlm   A     PO4PHOSPHATE ION H - 152
1qlm_A_1471qlm   A     PO4PHOSPHATE ION E - 156
1qu9_A_461qu9   A     CSPS-PHOSPHOCYSTEINE T - 74
1qu9_A_461qu9   A     CSPS-PHOSPHOCYSTEINE T - 75
1qu9_A_461qu9   A     CSPS-PHOSPHOCYSTEINE V - 76
1qu9_A_461qu9   A     CSPS-PHOSPHOCYSTEINE F - 77
1qu9_A_461qu9   A     CSPS-PHOSPHOCYSTEINE V - 78
1s0y_B_141s0y   B     MLAMALONIC ACID S - 34
1s0y_B_141s0y   B     MLAMALONIC ACID I - 38
1s0y_B_141s0y   B     MLAMALONIC ACID I - 39
1s0y_A_141s0y   A     MLAMALONIC ACID F - 40
1s0y_B_141s0y   B     MLAMALONIC ACID N - 40
7mdh_A_1997mdh   A     ZNZINC ION L - 200
7mdh_A_1997mdh   A     ZNZINC ION D - 201
7mdh_A_1997mdh   A     ZNZINC ION R - 204
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gyx_A_141gyx   A AC1EPE BINDING SITE FOR CHAIN BS - 38

Clusters included in this Subclass
CLUSTER: HE.5.12
CLUSTER: HE.5.34
CLUSTER: HE.6.0
CLUSTER: HE.6.7
CLUSTER: HE.7.0
CLUSTER: HE.7.29
CLUSTER: HE.7.3
CLUSTER: HE.8.3
CLUSTER: HE.8.6