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Information on SUBCLASS 0.1.1
Subclass Accession number: 5188
Subclass: 0.1.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 51

Average sequence ID (%) : 6.8 +/- 11.2
Average RMSD (Å) : 0.502 +/- 0.163

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: pXXX
(φψ)-conformation: aabb
Pattern: xx[adegknqrst]xxxxx
Conservation:-0.079-0.8342.118-0.765-0.399-0.2000.159-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1bg2_*_1971bg2   -200207HSSRSHSIHHHHSEEEaaaabbbb
1cb6_A_13351cb6   A13401347ARRARVVWHHHHSEEEaaaaxbxx
1dfo_A_131dfo   A2531RQEEHIE.HHHHSEE.aaaabxx.
1dfx_*_451dfx   -4552MEKHVPVIHHHHSEEEaaaaxxbb
1dq3_A_2361dq3   A247254FDAEGHVSHHHH-EEEaaaaxbbb
1ds6_B_911ds6   B93100ALKKETIVHHHH-EEEaaaaxbxx
1dz4_A_2191dz4   A222228IVANGQV.HHHT-EE.aaaaxbb.
1ed1_A_971ed1   A105111QRHLVVE.HHHH-EE.aaaabxb.
1ekk_A_2571ekk   A260267VQEWATIEHHHH-EEEaaaaxbbb
1elj_A_3201elj   A328334AVQHAYL.HHHT-EE.aaaaxxx.
1ex0_A_4281ex0   A433440AEVNSDLIHHHH-EEEaaaaxxxb
1f28_A_41f28   A1623IINHGEDRHHHH-EEEaaaaxxxb
1g61_A_20591g61   A20592065VGSLSVA.HHHH-EE.aaaabbb.
1ih7_A_7761ih7   A776783YISIASVSHHHH-EEEaaaaxxbb
1itw_A_1811itw   A181188FYGSEKAAHHHH-EEEaaaaxbbb
1iuz_*_521iuz   -5259ADAISYDDHHHH-EEEaaaaxbax
1iwe_A_3951iwe   A395402ILQKVEVEHHHH-EEEaaaaxbxx
1j3k_C_3251j3k   C335342IMMNGNKQHHHH-EEEaaaaxxxb
1j7x_A_931j7x   A96103VNTVFKVSHHHH-EEEaaaabxbb
1jk7_A_2001jk7   A203209DLLWSDP.HHHH-EE.aaaaxbx.
1k0i_A_631k0i   A6572MARDGLVHHHHH-EEEaaaaxbxb
1k8k_A_3881k8k   A390396FYQVCHT.HHHHSEE.aaaaxxx.
1kl1_A_91kl1   A2127RQHAKIE.HHHHSEE.aaaaxxx.
1kwm_A_941kwm   A99106LLNKLDFYHHHH-EEEaaaabbbx
1l0l_B_4071l0l   B416423KFVSGRKSHHHHS-EEaaaaxpbb
1lm5_A_27851lm5   A27882794AINRSMV.HHHH-EE.aaaaxbx.
1n62_B_3011n62   B304311NLSTTSFAHHHHS-EEaaaabpxb
1nm1_A_3521nm1   A352358FQQMWIS.HHHHSEE.aaaaxxx.
1nqj_B_8971nqj   B905911SSDKATV.HHHH-EE.aaaaxxx.
1nrl_A_2691nrl   A288293FNTVFN..HHHTEE..aaaaxb..
1nsa_*_941nsa   -99106FLDNLDFYHHHH-EEEaaaabbbx
1nz0_A_131nz0   A2027IFKEGKSLHHHHSEEEaaaaxbbb
1o7f_A_491o7f   A5562ICLCGYYEHHHH-EEEaaaaxbbb
1o7t_A_1551o7t   A165171LKEYGKP.HHHHSEE.aaaaxbx.
1obr_*_941obr   -99106LVNNREIYHHHH-EEEaaaabbxb
1oe9_B_571oe9   B5966ELKSRRVDHHHH-EEEaaaaxbbx
1oqj_A_1451oqj   A145151WKRAIRL.HHHHSEE.aaaaxbb.
1p2z_A_8091p2z   A809816FFRNFQPMHHHH-EEEaaaaxbwb
1pcv_A_1851pcv   A185192DPTSTFTCHHHH-EEEaaaaxbbb
1pot_*_3181pot   -320326TIKNGEW.HHHHSEE.aaaaxbx.
1pug_B_251pug   B2734EIAQLEVTHHHH-EEEaaaaxbbb
1qlm_A_2191qlm   A230237ILYGGTVYHHHH-EEEaaaaxbbb
1r5y_A_1901r5y   A192199QAENAALFHHHH-EEEaaaabbbb
1rli_A_1061rli   A109116QMSVKQAYHHHTSEEEaaaaxbbb
1rre_A_7491rre   A751758VIADLDIHHHHHSEEEaaaabxbb
1ug9_A_9581ug9   A960967IKEWRFGGHHHHSEEEaaaabxbv
1vjl_A_1311vjl   A134140VEKHSIE.HHHH-EE.aaaaxbx.
2plt_*_522plt   -5259ADAISRDDHHHH-EEEaaaaxbax
2prg_A_3112prg   A330335LASLMN..HHHTEE..aaaabb..
3mbp_*_3153mbp   -323329NAQKGEI.HHHHSEE.aaaaxbx.
3pvi_A_1463pvi   A149155VMEHGTK.HHHHSEE.aaaaxbx.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1bg2_*_1971bg2   *     ACTACETATE ION M - 197
1bg2_*_1971bg2   *     ACTACETATE ION H - 200
1bg2_*_1971bg2   *     MGMAGNESIUM ION S - 201
1bg2_*_1971bg2   *     ACTACETATE ION S - 201
1bg2_*_1971bg2   *     ADPADENOSINE-5'-DIPHOSPHATE S - 202
1bg2_*_1971bg2   *     MGMAGNESIUM ION S - 202
1bg2_*_1971bg2   *     ACTACETATE ION S - 206
1bg2_*_1971bg2   *     ACTACETATE ION I - 207
1bg2_*_1971bg2   *     ACTACETATE ION F - 208
1dfx_*_451dfx   *     FEFE (III) ION K - 47
1dfx_*_451dfx   *     FEFE (III) ION H - 48
1ed1_A_971ed1   A     IPAISOPROPYL ALCOHOL E - 98
1ed1_A_971ed1   A     IPAISOPROPYL ALCOHOL E - 99
1ed1_A_971ed1   A     IPAISOPROPYL ALCOHOL Q - 102
1ex0_A_4281ex0   A     CACALCIUM ION V - 435
1ex0_A_4281ex0   A     CACALCIUM ION N - 436
1ex0_A_4281ex0   A     CACALCIUM ION S - 437
1ex0_A_4281ex0   A     CACALCIUM ION D - 438
1j7x_A_931j7x   A     MSESELENOMETHIONINE Q - 93
1j7x_A_931j7x   A     MSESELENOMETHIONINE A - 94
1j7x_A_931j7x   A     MSESELENOMETHIONINE L - 95
1j7x_A_931j7x   A     MSESELENOMETHIONINE V - 96
1jk7_A_2001jk7   A     OKAOKADAIC ACID C - 202
1jk7_A_2001jk7   A     MNMANGANESE (II) ION L - 205
1jk7_A_2001jk7   A     OKAOKADAIC ACID W - 206
1nrl_A_2691nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER F - 281
1nrl_A_2691nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER C - 284
1nrl_A_2691nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER Q - 285
1nrl_A_2691nrl   A     SRL[2-(3,5-DI-TERT-BUTYL-4-HYDROXY-PHENYL)-1-(DIETHOXY-PHOSPHORYL)-VINYL]-PHOSPHONIC ACID DIETHLYL ESTER F - 288
1obr_*_941obr   *     CACALCIUM ION V - 100
1obr_*_941obr   *     CACALCIUM ION N - 101
1obr_*_941obr   *     CACALCIUM ION N - 102
1obr_*_941obr   *     CACALCIUM ION R - 103
1obr_*_941obr   *     CACALCIUM ION E - 104
1obr_*_941obr   *     CACALCIUM ION Y - 106
1qlm_A_2191qlm   A     PO4PHOSPHATE ION I - 230
1r5y_A_1901r5y   A     DQU2,6-DIAMINO-3H-QUINAZOLIN-4-ONE I - 201
1r5y_A_1901r5y   A     DQU2,6-DIAMINO-3H-QUINAZOLIN-4-ONE Q - 202
1rli_A_1061rli   A     PTPLATINUM (II) ION V - 120
1ug9_A_9581ug9   A     CACALCIUM ION G - 968
1vjl_A_1311vjl   A     MSESELENOMETHIONINE D - 131
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) H - 323
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) I - 326
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) Y - 327
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) L - 330
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) L - 333
2prg_A_3112prg   A     BRL2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL) M - 334
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
2prg_A_3112prg   A CA1RESIDUES INVOLVED IN BINDING THE LXXLL COACTIVATOR HELIX.L - 311
2prg_A_3112prg   A CA1RESIDUES INVOLVED IN BINDING THE LXXLL COACTIVATOR HELIX.Q - 314
2prg_A_3112prg   A CA1RESIDUES INVOLVED IN BINDING THE LXXLL COACTIVATOR HELIX.V - 315
2prg_A_3112prg   A CA1RESIDUES INVOLVED IN BINDING THE LXXLL COACTIVATOR HELIX.L - 318
2prg_A_3112prg   A LB1THESE RESIDUES ARE INVOLVED IN LIGAND BINDING.H - 323
2prg_A_3112prg   A LB1THESE RESIDUES ARE INVOLVED IN LIGAND BINDING.Y - 327
2prg_A_3112prg   A LB1THESE RESIDUES ARE INVOLVED IN LIGAND BINDING.L - 330

Clusters included in this Subclass
CLUSTER: HE.0.0
CLUSTER: HE.1.3