ArchDB - Biological DataBase of Protein Loops

Grup de Recerca en Informàtica Biomèdica

Information on SUBCLASS 2.5.2

Subclass Accession number: 8249
Subclass: 2.5.2

PSSM

Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates:

Rasmol PDB

Jmol PDB

Consensus coordinates:

Rasmol PDB

Jmol PDB

Number of loops: 23

Average sequence ID (%) : 14.1 +/- 18.9
Average RMSD (Å) : 0.726 +/- 0.205

Consensus geometry

d (Å): 9

delta (°): 45-90

theta (°): 45-90

rho (°): 90-135

Consensus Sequence:	XXXXhX
(φψ)-conformation:	aappbb

Pattern:	[adeknqrst]	x	x	x	[agknqs]	[acgikltv]	[dekpr]	[afilmvwy]	[aikltv]	[afgiltv]
Conservation:	1.122	-1.434	0.023	-0.089	1.680	-1.519	0.568	0.224	-0.214	-0.360

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1ab4_*_403	1ab4	-	408	416	TALVANPWQ.	HHHHHS-EE.	aaaaabpbx.
1b9l_A_23	1b9l	A	23	32	EEEINNRQDI	HHHHHS-EEE	aaaaabxbxb
1bry_Y_11	1bry	Y	20	29	NLREALPYER	HHHHTS-EEE	aaaaaxxbab
1c4t_A_186	1c4t	A	193	202	EAKNSTAMLT	HHHHSS-EEE	aaaaabxxbb
1ehw_A_61	1ehw	A	66	75	RYMSSGPVVA	HHHTSS-EEE	aaaaabxbbb
1fx2_A_1075	1fx2	A	1076	1085	EDRKQIDVTA	HHHHT--EEE	aaaaabbbbx
1fx4_A_1063	1fx4	A	1064	1073	EDRNQLDVTT	HHHHTS-EEE	aaaaabbbbx
1g8p_A_60	1g8p	A	64	73	ALAALLPEIE	HHHHHS--EE	aaaaaxpxxx
1jdr_A_201	1jdr	A	204	213	LNLLNEDWKL	HHHHHS-EEE	aaaaaxxxbx
1jhd_A_18	1jhd	A	26	35	HEAESLPSVV	HHHTTS-EEE	aaaaaxwbbx
1ji1_A_128	1ji1	A	128	137	DWLKNGVMYQ	HHHHH--EEE	aaaaaxbbbx
1k44_A_59	1k44	A	64	73	EFITSGPVVA	HHTTTS-EEE	aaaaabxbbb
1kbl_A_383	1kbl	A	384	393	AALKAGEVIG	HHHHHS-EEE	aaaaaxxxae
1kkh_A_182	1kkh	A	186	195	EFLKNCKFLI	HHHHT--EEE	aaaaaxbbbx
1m5y_A_396	1m5y	A	416	425	EQRASAYVKI	HHHHHS-EEE	aaaaaxxbbx
1m7g_A_14	1m7g	A	19	28	ELRNQRGLTI	HHHTSS-EEE	aaaaabxbbb
1m8p_A_21	1m8p	A	26	35	AEAESLPAVT	HHHTTS-EEE	aaaaapxxbx
1me8_A_466	1me8	A	468	477	QLQSKAKITL	HHHHH--EEE	aaaaapbbbx
1nhk_L_60	1nhk	L	65	74	QFMISGPVVL	HHHTSS-EEE	aaaaabxbbx
1np3_A_11	1np3	A	12	21	SIIQGKKVAI	HHHHTS-EEE	aaaaabxbbb
1npk_*_65	1npk	-	70	79	SFITSGPVVA	HHHTSS-EEE	aaaaabxbbx
1nue_A_61	1nue	A	66	75	KYMNSGPVVA	HHHHSS-EEE	aaaaabxbbx
3pvi_A_88	3pvi	A	92	101	AKYRQVPWIF	HHHHTS-EEE	aaaaabxbbb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1nhk_L_60	1nhk	L	CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE	L - 63
1nhk_L_60	1nhk	L	CMPADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE	M - 67
1nue_A_61	1nue	A	GDPGUANOSINE-5'-DIPHOSPHATE	L - 64
1nue_A_61	1nue	A	GDPGUANOSINE-5'-DIPHOSPHATE	Y - 67

Clusters included in this Subclass

CLUSTER: HE.2.30

CLUSTER: HE.3.31

CLUSTER: HE.4.37

CLUSTER: HE.5.67