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Information on SUBCLASS 4.1.2
Subclass Accession number: 8407
Subclass: 4.1.2 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 48

Average sequence ID (%) : 18.4 +/- 18.6
Average RMSD (Å) : 0.594 +/- 0.280

Consensus geometry
d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 90-135
Consensus Sequence: pXXPpXXh
(φψ)-conformation: aabaapbb
Pattern: [acfilmtv]xxxx[ekpqrst][adegknqrst]xx[fiklmtv]x
Conservation:-0.1400.016-0.148-0.565-0.5422.6420.262-0.748-0.9460.728-0.558
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1azw_A_2711azw   A277287LHKAWPKAQLQHHHH-TTSEEEaaaabaaxxxb
1ceo_*_1471ceo   -160170IREIDSTMWLYHHHH-SS--EEaaaabaaxxbb
1cjc_A_161cjc   A2535LLKHHSRAHVDHHHH-SS-EEEaaaabaapbbb
1cl8_A_351cl8   A4656LSNEYPQLSFRHHHH-TTS-EEaaaabaaxbbb
1dle_A_231dle   A2333DYHKQPWQAKIHHHH-TTEEEEaaaabaaxbbb
1dqa_A_6571dqa   A671681LHEYFPEMQILHHHH-TT-EEEaaaabaaxbxa
1edt_*_1481edt   -156166LRANMPDKIISHHHH-TTSEEEaaaabaabxbb
1f6k_A_1701f6k   A176186LKKAYPNHLIWHHHH-TTSEEEaaaabaaxxbb
1ffr_A_2511ffr   A259269LKQAHPDLKILHHHH-TT-EEEaaaabaaxxbb
1g99_A_1241g99   A134144CAEIMPGTPMVHHHH-TTS-EEaaaabaaxpbb
1gte_A_6181gte   A628638LKADFPDNIVIHHHH-TTSEEEaaaabaaxxbb
1gtk_A_1301gtk   A136146LAERRPDLIIRHHHH-TTSEEEaaaabaaxxxb
1gzg_A_1071gzg   A115125LRERFPELGIIHHHH-TTSEEEaaaabaaxxbb
1h7n_A_1111h7n   A119129IREYFPELYIIHHHH-TTSEEEaaaabaaxxbb
1hl2_A_1711hl2   A177187IRREHPDLVLYHHHH-TT-EEEaaaabaaxxbx
1ig8_A_2111ig8   A219229SYYTDPETKMGHHHH-TTEEEEaaaabaapabb
1j0h_A_3351j0h   A345355VKALKPDVYILHHHH-TT-EEEaaaabaaxxbb
1jag_A_511jag   A5868LTKTYPEWHVAHHHH-TTSEEEaaaabaapbbx
1jbq_A_2591jbq   A268278LKEKCPGCRIIHHHH-TT-EEEaaaabaaxxbb
1jp4_A_491jp4   A6272LSRKFPKLTIIHHHH-TTSEEEaaaabaaxxbb
1jr1_A_2811jr1   A290300MKEKYPNLQVIHHHHSTT-EEEaaaabaapxbb
1jr1_B_2811jr1   B290300MKEKYPNLQVIHHHH-TTSEEEaaaabaaxxbb
1kep_A_151kep   A2434VYNNHPDVHVTHHHH-TTSEEEaaaabaaxxbb
1kf6_A_141kf6   A2333AAQANPNAKIAHHHH-TT--EEaaaabaaxbbx
1l6s_A_971l6s   A105115CKQTVPEMIVMHHHH-TTSEEEaaaabaaxxxb
1l6w_A_1421l6w   A153163LKMHAPQAKVLHHHH-TT-EEEaaaabaaxbxb
1lhp_A_881lhp   A101111LKQQNPRLVYVHHHH-TT-EEEaaaabaaxbbx
1ll7_A_1071ll7   A115125LKKNNRNLKTLHHHH-TT-EEEaaaabaaxbbb
1m0d_A_721m0d   A8191IREQHPELDIRHHHH-TT--EEaaaabaaxbbb
1m6i_A_1411m6i   A150160IRARDPGARVLHHHHSTT-EEEaaaabaapbbb
1m6y_A_371m6y   A4252ILEHCPGCRIIHHHH-TT-EEEaaaabaaxbbb
1mml_*_2081mml   -210220FRIQHPDLILLHHHH-TTSEEEaaaabaabbbb
1o6b_A_1021o6b   A106116NRVLDESIETFHHHH-TTSEEEaaaabaabxbb
1o7d_A_971o7d   A107117SLLANPTRRFIHHHH-TT--EEaaaabaapbbb
1ogs_A_3201ogs   A327337THRLFPNTMLFHHHH-TTSEEEaaaabaabxbb
1p0k_A_1011p0k   A110120VRKENPNGLIFHHHH-SSS-EEaaaabaaxxbb
1p0k_A_2381p0k   A245255IRSEFPASTMIHHHH-TTSEEEaaaabaaxxbb
1pv8_A_1001pv8   A108118LRKTFPNLLVAHHHHSTTSEEEaaaabaaxxbx
1qjc_A_961qjc   A106116NRHLMPELESVHHHH-TTSEEEaaaabaabxxb
1udb_*_1481udb   -163173LQKAQPDWSIAHHHHSTT-EEEaaaabaaxbbx
1vgv_A_2201vgv   A232242IATTHQDIQIVHHHH-TT--EEaaaabaabbbb
1zpd_A_5151zpd   A524534VALANTDGPTLHHHH--SS-EEaaaaxaabxbx
2ayq_A_1952ayq   A207217TAKKYPDVELSHHHH-TTSEEEaaaabaabxxb
2bce_*_3942bce   -404414HKSHAKSANTYHHHH-SS--EEaaaapaabxbb
2ebn_*_1492ebn   -159169TKQAMPNKLVTHHHH-TTSEEEaaaabaabxbb
2plc_*_1022plc   -112122FLKKNPKETIIHHHHSTT--EEaaaabaaxbbb
2ptd_*_912ptd   -101111FLKDNPSETIIHHHH-TT--EEaaaabaaxbbb
5rub_A_2695rub   A275285ARRRFPDNFLHHHHH-TTS-EEaaaabaabpbx
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1cjc_A_161cjc   A     FADFLAVIN-ADENINE DINUCLEOTIDE P - 16
1cjc_A_161cjc   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 17
1cjc_A_161cjc   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 18
1cjc_A_161cjc   A     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 37
1dqa_A_6571dqa   A     MAH3-HYDROXY-3-METHYL-GLUTARIC ACID M - 657
1dqa_A_6571dqa   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE M - 657
1dqa_A_6571dqa   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE N - 658
1dqa_A_6571dqa   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE M - 659
1dqa_A_6571dqa   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE I - 660
1dqa_A_6571dqa   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE S - 661
1ffr_A_2511ffr   A     NAGN-ACETYL-D-GLUCOSAMINE S - 271
1ffr_A_2511ffr   A     NAGN-ACETYL-D-GLUCOSAMINE G - 273
1gte_A_6181gte   A     FMNFLAVIN MONONUCLEOTIDE S - 640
1gtk_A_1301gtk   A     DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID L - 130
1gtk_A_1301gtk   A     DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID R - 131
1gtk_A_1301gtk   A     DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID R - 132
1gzg_A_1071gzg   A     LAF5-FLUOROLEVULINIC ACID D - 127
1gzg_A_1071gzg   A     LAF5-FLUOROLEVULINIC ACID V - 128
1h7n_A_1111h7n   A     SHFLAEVULINIC ACID D - 131
1h7n_A_1111h7n   A     ZNZINC ION D - 131
1h7n_A_1111h7n   A     ZNZINC ION V - 132
1ig8_A_2111ig8   A     SULSULFATE ANION I - 231
1ig8_A_2111ig8   A     SULSULFATE ANION F - 232
1jag_A_511jag   A     ATPADENOSINE-5'-TRIPHOSPHATE K - 51
1jag_A_511jag   A     ATPADENOSINE-5'-TRIPHOSPHATE S - 52
1jag_A_511jag   A     ATPADENOSINE-5'-TRIPHOSPHATE T - 53
1jbq_A_2591jbq   A     PLPPYRIDOXAL-5'-PHOSPHATE G - 259
1jbq_A_2591jbq   A     PLPPYRIDOXAL-5'-PHOSPHATE T - 260
1jbq_A_2591jbq   A     PLPPYRIDOXAL-5'-PHOSPHATE I - 261
1jbq_A_2591jbq   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 262
1jbq_A_2591jbq   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 263
1jbq_A_2591jbq   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 266
1jbq_A_2591jbq   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 270
1jp4_A_491jp4   A     PO4PHOSPHATE ION D - 51
1jp4_A_491jp4   A     MGMAGNESIUM ION D - 51
1jr1_B_2811jr1   B     MOAMYCOPHENOLIC ACID G - 302
1jr1_A_2811jr1   A     IMPINOSINIC ACID N - 303
1jr1_A_2811jr1   A     MOAMYCOPHENOLIC ACID N - 303
1kep_A_151kep   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 15
1kep_A_151kep   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 16
1kep_A_151kep   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 17
1kep_A_151kep   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE L - 36
1kep_A_151kep   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE D - 37
1kf6_A_141kf6   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 14
1kf6_A_141kf6   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 15
1kf6_A_141kf6   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 16
1kf6_A_141kf6   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 35
1kf6_A_141kf6   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 36
1l6s_A_971l6s   A     ZNZINC ION D - 117
1l6s_A_971l6s   A     DSB4,7-DIOXOSEBACIC ACID D - 117
1l6w_A_1421l6w   A     GOLGLYCEROL L - 163
1m6i_A_1411m6i   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 141
1m6i_A_1411m6i   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 142
1m6i_A_1411m6i   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 143
1m6i_A_1411m6i   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 162
1m6i_A_1411m6i   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 163
1m6y_A_371m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE G - 37
1m6y_A_371m6y   A     MSESELENOMETHIONINE H - 38
1m6y_A_371m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE H - 38
1m6y_A_371m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE S - 39
1m6y_A_371m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 54
1m6y_A_371m6y   A     MSESELENOMETHIONINE D - 55
1m6y_A_371m6y   A     SAHS-ADENOSYL-L-HOMOCYSTEINE D - 55
1o6b_A_1021o6b   A     MSESELENOMETHIONINE G - 102
1o6b_A_1021o6b   A     MSESELENOMETHIONINE T - 103
1o6b_A_1021o6b   A     MSESELENOMETHIONINE S - 104
1o6b_A_1021o6b   A     MSESELENOMETHIONINE V - 105
1o6b_A_1021o6b   A     MSESELENOMETHIONINE F - 116
1p0k_A_2381p0k   A     PO4PHOSPHATE ION S - 257
1pv8_A_1001pv8   A     ZNZINC ION D - 120
1pv8_A_1001pv8   A     PB13-(2-AMINOETHYL)-4-(AMINOMETHYL)HEPTANEDIOIC ACID D - 120
1pv8_A_1001pv8   A     ZNZINC ION V - 121
1udb_*_1481udb   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 149
1udb_*_1481udb   *     UFGURIDINE-5'-DIPHOSPHATE-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE Y - 149
1udb_*_1481udb   *     UFGURIDINE-5'-DIPHOSPHATE-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE G - 150
1udb_*_1481udb   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE K - 153
1udb_*_1481udb   *     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 177
1udb_*_1481udb   *     UFGURIDINE-5'-DIPHOSPHATE-4-DEOXY-4-FLUORO-ALPHA-D-GALACTOSE Y - 177
1vgv_A_2201vgv   A     MSESELENOMETHIONINE I - 225
1vgv_A_2201vgv   A     MSESELENOMETHIONINE A - 228
1vgv_A_2201vgv   A     MSESELENOMETHIONINE L - 229
1vgv_A_2201vgv   A     MSESELENOMETHIONINE D - 238
1vgv_A_2201vgv   A     MSESELENOMETHIONINE I - 239
1vgv_A_2201vgv   A     MSESELENOMETHIONINE Q - 240
1vgv_A_2201vgv   A     MSESELENOMETHIONINE I - 241
1vgv_A_2201vgv   A     MSESELENOMETHIONINE V - 242
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gtk_A_1301gtk   A AC1DPM BINDING SITE FOR CHAIN AR - 132
1gzg_A_1071gzg   A NAANA BINDING SITE FOR CHAIN AD - 127
1ogs_A_3201ogs   A BC1SO4 BINDING SITE FOR CHAIN AR - 329
1ogs_A_3201ogs   A AC1SO4 BINDING SITE FOR CHAIN AE - 340

Clusters included in this Subclass
CLUSTER: HE.3.24
CLUSTER: HE.4.22
CLUSTER: HE.4.225
CLUSTER: HE.5.6
CLUSTER: HE.6.38