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Information on SUBCLASS 3.3.1
Subclass Accession number: 204
Subclass: 3.3.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 37

Average sequence ID (%) : 11.9 +/- 14.5
Average RMSD (Å) : 0.670 +/- 0.184

Consensus geometry
d (Å): 7 delta (°): 45-90 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: XppXphX
(φψ)-conformation: aapaabb
Pattern: xx[afiklmtv]x[aegknqrst][dehknqrstw][dekprs][cdehknqrsty][acfiklmtv]xxx
Conservation:-0.664-0.6260.807-0.6720.458-0.1551.848-0.6631.261-0.051-1.543-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1b7g_O_111b7g   O1829DAIIKQPDMKLVHHHHT-TTEEEEaaaaaxaabbxa
1bjn_A_2611bjn   A278287GVIDNSDFYR..HHHHH-SSEE..aaaaabaabb..
1bo4_A_641bo4   A6879GNLLRSKTFIALHHHHHSSSEEEEaaaaaxaabbbb
1c7n_A_1531c7n   A157168EKLSKDKNNKALHHHHT-TTEEEEaaaaaxaaxabb
1chu_A_1451chu   A146157SKALNHPNIRVLHHHHH-TTEEEEaaaaaxaabbbx
1cl1_A_2591cl1   A275286EWLAEHPQVARVHHHHT-TTEEEEaaaaaxaababb
1cs1_A_2481cs1   A264275KYLQTQPLVKKLHHHTT-TTEEEEaaaaaxaaxabb
1d2f_A_1511d2f   A155166EAVLAKPECKIMHHHHTSTTEEEEaaaaapaaxabb
1elu_A_2981elu   A314324RGLNQLPHVHC.HHHHHSTTEEE.aaaaaxaabbx.
1eup_A_451eup   A4958KAALSDLRLS..HHHHH-TTEE..aaaaaxaaxx..
1f5a_A_3981f5a   A403414GSLEKNEFITLAHHHHTSTTEEEEaaaaabaababb
1fep_A_181fep   A2031EQNLQAPGVSTIHHHTTSTTEEEEaaaaaxaabbbb
1fg7_A_2671fg7   A281292AALKEIPCVEQVHHHHHSTTEEEEaaaaaxaaxabb
1gc0_A_2621gc0   A278289EFLARQPQVELIHHHHT-TTEEEEaaaaaxaaxabb
1gud_A_1461gud   A157168EAFKKASQIKLVHHHHT-TTEEEEaaaaabaaxbxa
1i52_A_371i52   A4354HALLAHPRVKRVHHHHTSTTEEEEaaaaaxaaxabb
1ibj_A_3871ibj   A392402HLVETTKYFSI.HHHHH-SSSEE.aaaaapaabxx.
1iq0_A_2481iq0   A254263ALLEQSPHVF..HHHTTSTTEE..aaaaaxaabb..
1jfb_A_481jfb   A5261CFVATSEKLS..HHHHH-TTEE..aaaaaxaabb..
1jvw_A_361jvw   A5363EQKAAQPDAVK.HHHHHSTTEEE.aaaaapaaxbb.
1k1x_A_2331k1x   A239249DAITSNEKINL.HHHHH-TTEEE.aaaaapaabbx.
1kdg_A_4101kdg   A412423QTALARPNFTFKHHHHT-TTEEEEaaaaaxaabbbb
1lou_A_721lou   A7788RELRIRDNVRRVHHHHTSTTEEEEaaaaaxaaxabb
1m1h_A_1471m1h   A151162MAIEKTPHVFRPHHHHTSTTEEEEaaaaaxaabbMx
1m6y_A_2461m6y   A254264ETFRNSKKLRI.HHHHH-SSEEE.aaaaaxaabbx.
1mwv_A_6631mwv   A665676FVNLLDMGTEWKHHHHT-TTEEEEaaaaaxaabbbb
1n40_A_481n40   A5261TQVLEDRRFS..HHHHT-TTEE..aaaaabaaxx..
1nk4_A_3551nk4   A358369VAWLGDETKKKSHHHHH-TTSEEEaaaaaxaaxxbb
1nx9_A_5021nx9   A502513REAESRPDVVTYHHHHTSTTEEEEaaaaaxaabbbb
1odo_A_461odo   A5059KQLLTSSDVS..HHHTT-TTEE..aaaaaxaabb..
1q5d_A_551q5d   A5968SAVFRDERFA..HHHHT-TTEE..aaaaabaabx..
1q8b_A_341q8b   A4051EETNKEEGCITFHHHTTSTTEEEEaaaaaxaaxabb
1qnx_A_1511qnx   A157168YTQMVWANTKEVHHHHT-TT--EEaaaaaxaaxabb
1scj_B_3531scj   B357368KELKKDPSVAYVHHHHTSTTEEEEaaaaaxaababb
1tgo_A_921tgo   A98109DKIKEHPAVVDIHHHHHSTTEEEEaaaaaxaaxaeb
1ufa_A_3641ufa   A373383RLLAQNPKVRP.HHHHT-SS-EE.aaaaaxaabbx.
2irf_G_742irf   G8393CAMNSLPDIEE.HHHHH-TTEEE.aaaaaxaabbx.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c7n_A_1531c7n   A     PLPPYRIDOXAL-5'-PHOSPHATE C - 171
1cl1_A_2591cl1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) R - 262
1cs1_A_2481cs1   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) R - 251
1d2f_A_1511d2f   A     PLPPYRIDOXAL-5'-PHOSPHATE C - 169
1eup_A_451eup   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 52
1f5a_A_3981f5a   A     MSESELENOMETHIONINE T - 412
1f5a_A_3981f5a   A     MSESELENOMETHIONINE L - 413
1fep_A_181fep   A     MSESELENOMETHIONINE P - 26
1fep_A_181fep   A     MSESELENOMETHIONINE S - 29
1fep_A_181fep   A     MSESELENOMETHIONINE T - 30
1fep_A_181fep   A     MSESELENOMETHIONINE I - 31
1fg7_A_2671fg7   A     MSESELENOMETHIONINE E - 267
1fg7_A_2671fg7   A     MSESELENOMETHIONINE R - 268
1fg7_A_2671fg7   A     MSESELENOMETHIONINE V - 269
1fg7_A_2671fg7   A     MSESELENOMETHIONINE A - 270
1gc0_A_2621gc0   A     LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE) R - 265
1gud_A_1461gud   A     ZNZINC ION E - 157
1gud_A_1461gud   A     ZNZINC ION K - 160
1i52_A_371i52   A     CACALCIUM ION L - 45
1i52_A_371i52   A     CACALCIUM ION L - 46
1i52_A_371i52   A     CACALCIUM ION A - 47
1i52_A_371i52   A     CACALCIUM ION H - 48
1i52_A_371i52   A     CACALCIUM ION P - 49
1i52_A_371i52   A     CACALCIUM ION V - 51
1i52_A_371i52   A     CTPCYTIDINE-5'-TRIPHOSPHATE A - 57
1jfb_A_481jfb   A     GOLGLYCEROL V - 54
1jfb_A_481jfb   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 55
1jfb_A_481jfb   A     GOLGLYCEROL A - 55
1jfb_A_481jfb   A     GOLGLYCEROL T - 56
1jfb_A_481jfb   A     GOLGLYCEROL S - 57
1jfb_A_481jfb   A     GOLGLYCEROL E - 58
1jfb_A_481jfb   A     GOLGLYCEROL L - 60
1jfb_A_481jfb   A     GOLGLYCEROL S - 61
1kdg_A_4101kdg   A     MANALPHA-D-MANNOSE T - 421
1n40_A_481n40   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 55
1n40_A_481n40   A     SULSULFATE ANION R - 58
1n40_A_481n40   A     SULSULFATE ANION F - 60
1n40_A_481n40   A     SULSULFATE ANION S - 61
1odo_A_461odo   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 53
1q5d_A_551q5d   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 62
1q8b_A_341q8b   A     MSESELENOMETHIONINE E - 34
1q8b_A_341q8b   A     MSESELENOMETHIONINE F - 35
1q8b_A_341q8b   A     MSESELENOMETHIONINE K - 36
1q8b_A_341q8b   A     MSESELENOMETHIONINE K - 37
1q8b_A_341q8b   A     MSESELENOMETHIONINE I - 49
1q8b_A_341q8b   A     MSESELENOMETHIONINE H - 52
1ufa_A_3641ufa   A     MSESELENOMETHIONINE P - 379
1ufa_A_3641ufa   A     MSESELENOMETHIONINE K - 380
1ufa_A_3641ufa   A     MSESELENOMETHIONINE V - 381
1ufa_A_3641ufa   A     MSESELENOMETHIONINE R - 382
2irf_G_742irf   G     IDOIODO GROUP N - 80
2irf_G_742irf   G     IDOIODO GROUP C - 83
2irf_G_742irf   G     IDOIODO GROUP A - 84
2irf_G_742irf   G     IDOIODO GROUP M - 85
2irf_G_742irf   G     IDOIODO GROUP S - 87
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gud_A_1461gud   A ZN2ZN BINDING SITE FOR CHAIN AE - 157

Clusters included in this Subclass
CLUSTER: HE.2.48
CLUSTER: HE.3.19
CLUSTER: HE.4.11
CLUSTER: HE.4.59
CLUSTER: HE.5.173
CLUSTER: HE.5.49
CLUSTER: HE.6.75