Logo
Information on SUBCLASS 1.2.5
Subclass Accession number: 5281
Subclass: 1.2.5 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 46

Average sequence ID (%) : 10.7 +/- 14.6
Average RMSD (Å) : 0.507 +/- 0.195

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: pXXhX
(φψ)-conformation: aalbb
Pattern: x[adegknqrst][dehknqrsty]x[adgknqrs][acfgikltv]xx
Conservation:-1.1240.1740.166-0.4621.7110.614-1.078-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1ax4_A_3721ax4   A381387YLESGVR.HHHH-EE.aaaavxb.
1azs_A_4091azs   A427434AAENHCLRHHHHTEEEaaaavxxx
1bt3_A_3261bt3   A326333NQKMGYKYHHHHTEEEaaaavbbb
1bw0_A_3611bw0   A369375LEEENVQ.HHHH-EE.aaaalbb.
1cer_O_841cer   O8491WAEAGVGVHHHHTEEEaaaavxab
1drk_*_1361drk   -149156VAAHKFNVHHHHT-EEaaaalxxx
1e5m_A_3491e5m   A360366AIAEDKV.HHHHTEE.aaaalbb.
1f0l_A_3101f0l   A311317GSVMGIA.HHHHTEE.aaaavbb.
1fvr_A_10071fvr   A10091015SLNYSVY.HHHH-EE.aaaalbb.
1gde_A_3321gde   A340346LKEARVA.HHHT-EE.aaaalbx.
1gg4_A_61gg4   A1017TDILNGELHHHTTEEEaaaalbxx
1h0c_A_3321h0c   A340346IDHFDIE.HHHH-EE.aaaavbx.
1ipa_A_201ipa   A2330RDSQRRFLHHHHTEEEaaaalbbx
1j1n_A_301j1n   A3643FRLTNVKLHHHHSEEEaaaavbbb
1j32_A_3351j32   A343349LDQHQVA.HHHH-EE.aaaalbx.
1j37_A_4651j37   A474480DEYSGIE.HHHH-EE.aaaavbb.
1j3n_A_3431j3n   A354360ALYHGVI.HHHHTEE.aaaavbx.
1j5u_A_261j5u   A3845LEEEGIVLHHHHT-EEaaaalxbx
1jce_A_1841jce   A191197RETYRVA.HHHH-EE.aaaavbx.
1jil_A_1651jil   A182189NRELNCKIHHHH-EEEaaaalxab
1jj2_R_121jj2   R1825MDFQNKLQHHHH-EEEaaaalbbb
1kas_*_3451kas   -356362ALRDQAV.HHHHTEE.aaaalbb.
1khd_A_1471khd   A154161LDDLNVCFHHHHSEEEaaaavbbb
1kob_A_3591kob   A359366PQEYQIYDHHHHTEEEaaaalbbx
1lla_*_2661lla   -279286SIHLGYVIHHHHTEEEaaaavbbb
1lwd_A_561lwd   A6572TQKYSVAVHHHHSEEEaaaavbbb
1m6i_A_1871m6i   A187194VTKTLRFKHHHH-EEEaaaavbxb
1n16_A_3081n16   A312319LKRTRLQKHHHHTEEEaaaavbbb
1n8n_A_1521n8n   A156163LQDKNIRIHHHTTEEEaaaalxab
1nns_A_2861nns   A286293DAKYGFVAHHHHTEEEaaaavxbx
1o17_A_1331o17   A140147VNKTNFVFHHHHSEEEaaaavbbb
1o4s_A_3251o4s   A333339LEEKKVA.HHHH-EE.aaaalbb.
1o8a_A_4811o8a   A490496LKYQGLC.HHHH-EE.aaaavbb.
1opk_A_4271opk   A429435SLAYNKF.HHHH-EE.aaaavxb.
1pot_*_421pot   -4754TKETGIKVHHHH-EEEaaaavxxb
1prx_A_1571prx   A170176TAEKRVA.HHHH-EE.aaaalbb.
1qh4_A_3081qh4   A312319LKRLRLQKHHHHTEEEaaaalbbb
1qis_A_3671qis   A374380REEFGVY.HHHH-EE.aaaavbx.
1v8g_A_1331v8g   A140147IEELGFGFHHHHSEEEaaaavbbb
1vjo_A_3281vjo   A336342LNEHNIE.HHHH-EE.aaaalbx.
1yaa_A_3671yaa   A374380EETHAVY.HHHH-EE.aaaalbx.
2plh_*_222plh   -2633AGVCRCKIHHHHTEEEaaaavbbb
2reb_*_1662reb   -182189LKQSNTLLHHHHT-EEaaaavxxb
2ts1_*_1642ts1   -181188YETEGCRLHHHH-EEEaaaavxab
7aat_A_3677aat   A374380TKEFSIY.HHHH-EE.aaaalbx.
8abp_*_158abp   -2835GKDLGFEVHHHHTEEEaaaavbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1azs_A_4091azs   A     FKPMETHYLPIPERAZINOFORSKOLIN L - 438
1cer_O_841cer   O     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE E - 94
1drk_*_1361drk   *     RIPRIBOSE(PYRANOSE FORM) A - 137
1drk_*_1361drk   *     RIPRIBOSE(PYRANOSE FORM) A - 138
1drk_*_1361drk   *     RIPRIBOSE(PYRANOSE FORM) R - 141
1h0c_A_3321h0c   A     GOLGLYCEROL W - 332
1h0c_A_3321h0c   A     GOLGLYCEROL R - 333
1h0c_A_3321h0c   A     GOLGLYCEROL V - 336
1h0c_A_3321h0c   A     GOLGLYCEROL S - 337
1h0c_A_3321h0c   A     GOLGLYCEROL I - 340
1h0c_A_3321h0c   A     GOLGLYCEROL F - 343
1h0c_A_3321h0c   A     GOLGLYCEROL D - 344
1h0c_A_3321h0c   A     GOLGLYCEROL I - 345
1j5u_A_261j5u   A     MSESELENOMETHIONINE E - 51
1j5u_A_261j5u   A     CACALCIUM ION E - 51
1jce_A_1841jce   A     MSESELENOMETHIONINE E - 184
1jce_A_1841jce   A     MSESELENOMETHIONINE A - 185
1jce_A_1841jce   A     MSESELENOMETHIONINE I - 186
1jce_A_1841jce   A     MSESELENOMETHIONINE V - 187
1jil_A_1651jil   A     485[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID Y - 170
1jil_A_1651jil   A     485[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID L - 173
1jil_A_1651jil   A     485[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID Q - 174
1jil_A_1651jil   A     485[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID A - 175
1jil_A_1651jil   A     485[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID D - 177
1jil_A_1651jil   A     485[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID F - 178
1jil_A_1651jil   A     485[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID L - 181
1jil_A_1651jil   A     485[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID Q - 190
1jil_A_1651jil   A     485[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID V - 191
1jil_A_1651jil   A     485[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID G - 192
1jil_A_1651jil   A     485[2-AMINO-3-(4-HYDROXY-PHENYL)-PROPIONYLAMINO]- (3,4,5-TRIHYDROXY-6-METHYL-TETRAHYDRO-PYRAN-2-YL)- ACETIC ACID G - 193
1n8n_A_1521n8n   A     AU3GOLD 3+ ION G - 166
2plh_*_222plh   *     GOLGLYCEROL Q - 22
2plh_*_222plh   *     DISDISORDERED SOLVENT K - 23
2plh_*_222plh   *     ACTACETATE ION G - 27
2plh_*_222plh   *     DISDISORDERED SOLVENT V - 28
2plh_*_222plh   *     SBT2-BUTANOL V - 28
2plh_*_222plh   *     DISDISORDERED SOLVENT C - 29
2plh_*_222plh   *     SBT2-BUTANOL C - 29
2plh_*_222plh   *     ACTACETATE ION R - 30
2plh_*_222plh   *     SBT2-BUTANOL R - 30
2plh_*_222plh   *     DISDISORDERED SOLVENT K - 32
2plh_*_222plh   *     ACTACETATE ION K - 32
2plh_*_222plh   *     ACTACETATE ION I - 33
2plh_*_222plh   *     GOLGLYCEROL I - 33
8abp_*_158abp   *     GLAALPHA D-GALACTOSE W - 16
8abp_*_158abp   *     GLBBETA-D-GALACTOSE W - 16
8abp_*_158abp   *     GLAALPHA D-GALACTOSE F - 17
8abp_*_158abp   *     GLBBETA-D-GALACTOSE F - 17
8abp_*_158abp   *     GLAALPHA D-GALACTOSE E - 20
8abp_*_158abp   *     GLBBETA-D-GALACTOSE E - 20
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1h0c_A_3321h0c   A AC3GOL BINDING SITE FOR CHAIN AR - 333
1h0c_A_3321h0c   A AC3GOL BINDING SITE FOR CHAIN AS - 337
1h0c_A_3321h0c   A AC4GOL BINDING SITE FOR CHAIN AF - 343
1o8a_A_4811o8a   A CL1CL BINDING SITE FOR CHAIN AW - 485
1o8a_A_4811o8a   A CL1CL BINDING SITE FOR CHAIN AW - 486
1o8a_A_4811o8a   A CL1CL BINDING SITE FOR CHAIN AR - 489

Clusters included in this Subclass
CLUSTER: HE.0.1
CLUSTER: HE.1.12
CLUSTER: HE.1.34