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Information on SUBCLASS 1.1.3
Subclass Accession number: 4350
Subclass: 1.1.3 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 84

Average sequence ID (%) : 10.3 +/- 13.9
Average RMSD (Å) : 0.479 +/- 0.201

Consensus geometry
d (Å): 7 delta (°): 0-45 theta (°): 45-90 rho (°): 225-270
Consensus Sequence: XXpXX
(φψ)-conformation: aapaa
Pattern: xxxx[adegknqrst]x[dekpqrst]xxx
Conservation:-0.814-1.212-0.400-0.3350.0190.6302.355-0.621-0.1230.501
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a6q_*_661a6q   -7786DHITNNQDFKHHHHTSHHHHaaaaabaaaa
1aqu_A_2171aqu   A223232IIQHTSFQEMHHHHTSHHHHaaaaaxaaaa
1aqw_A_1741aqw   A181190GRLSARPKLKHHHHTSHHHHaaaaapaaaa
1b35_B_1041b35   B104113EVLISNAMYQHHHHTSHHHHaaaaaxaaaa
1b4p_A_1781b4p   A185194ARFEGLKKISHHHHTSHHHHaaaaaxaaaa
1bn8_A_851bn8   A8897YLKAYDPSTWHHHHT-HHHHaaaaapaaaa
1c3c_A_101c3c   A1019MKDLWTEEAKHHHHTSHHHHaaaaaxaaaa
1cke_A_881cke   A8897SGEIRTQEVAHHHHTSHHHHaaaaaxaaaa
1crl_*_731crl   -7988DLVMQSKVFEHHHHTSHHHHaaaaaxaaaa
1efd_N_2531efd   N253262PLWQAMPFVRHHHHH-HHHHaaaaapaaaa
1efu_B_801efu   B8089DFVAKDAGFQHHHHT-HHHHaaaaaxaaaa
1elk_A_831elk   A8695HVLVASQDFVHHHHTSHHHHaaaaaxaaaa
1enp_*_1001enp   -100109EDVKANKRYAHHHHTSHHHHaaaaaxaaaa
1ezv_A_681ezv   A7382KNIFLSKENSHHHHTSHHHHaaaaaxaaaa
1f3b_A_1781f3b   A185194SRISSLPNVKHHHHTSHHHHaaaaaxaaaa
1fg7_A_2471fg7   A253262AAQALSPQGIHHHHTSHHHHaaaaaxaaaa
1fmj_A_2721fmj   A278287LCEHLNFEKFHHHHT-HHHHaaaaapaaaa
1fp1_D_1341fp1   D136145TTFLCYPALLHHHHT-HHHHaaaaaxaaaa
1fp2_A_1121fp2   A115124VECVLDPTLSHHHHT-HHHHaaaaapaaaa
1g38_A_3681g38   A372381VQWLNSEAMQHHHHTSHHHHaaaaaxaaaa
1gkz_A_841gkz   A8493FIIGCNPTILHHHHTSHHHHaaaaaxaaaa
1glq_A_1871glq   A190199KAFLSSPEHVHHHHTSHHHHaaaaaxaaaa
1gne_*_1731gne   -180189KRIEAIPQIDHHHHTSHHHHaaaaaxaaaa
1gnw_A_1921gnw   A199208AEITKRPASEHHHHSSHHHHaaaaaxaaaa
1gsu_A_1791gsu   A185194QRFEALEKISHHHHTSHHHHaaaaaxaaaa
1gwc_A_1901gwc   A197206ERFIELDAAKHHHHHSHHHHaaaaapaaaa
1gxs_B_2911gxs   B295304INYLNLPEVQHHHHT-HHHHaaaaaxaaaa
1h6h_A_1211h6h   A121130VWVLMDEDVRHHHHT-HHHHaaaaapaaaa
1hna_*_1781hna   -185194SRFEGLEKISHHHHTSHHHHaaaaaxaaaa
1iir_A_3561iir   A363372LATALTPETHHHHHTSHHHHaaaaaxaaaa
1ivy_A_3071ivy   A310319STYLNNPYVRHHHHTSHHHHaaaaaxaaaa
1iw0_A_81iw0   A2130EKAEHSTFMSHHHHT-HHHHaaaaapaaaa
1iyh_A_1721iyh   A179188KKVQAIPAVAHHHHHSHHHHaaaaaxaaaa
1j02_A_131j02   A2635IRAENSEFMRHHHHTSHHHHaaaaaxaaaa
1j7d_A_1151j7d   A123132RRLMMSKENMHHHHTSHHHHaaaaaxaaaa
1j8u_A_2911j8u   A291300VPLFSDRSFAHHHHTSHHHHaaaaaxaaaa
1j99_A_2081j99   A214223ILKNSSFQSMHHHHT-HHHHaaaaaxaaaa
1jat_B_1091jat   B117126RKEMATPANKHHHHTSHHHHaaaaaxaaaa
1jm6_A_10651jm6   A10651074DRVLSTPSVQHHHHTSHHHHaaaaapaaaa
1k3y_A_1791k3y   A186195TRISNLPTVKHHHHHSHHHHaaaaapaaaa
1k9x_A_431k9x   A5867HELLLHPEFVHHHHT-HHHHaaaaapaaaa
1kho_A_1141kho   A128137FGDADTPYHAHHHHTSHHHHaaaaaxaaaa
1kiy_A_291kiy   A4453AHHFAQPRQQHHHHTSHHHHaaaaaxaaaa
1kyz_A_1251kyz   A128137NLMNQDKVLMHHHHTSHHHHaaaaaxaaaa
1m0u_A_2221m0u   A229238DAVNALEPIKHHHHTSHHHHaaaaaxaaaa
1m8z_A_8531m8z   A854863MEFSQDQHGSHHHHTSHHHHaaaaaxaaaa
1mhq_A_951mhq   A98107HSEVAKFRFLHHHHTSHHHHaaaaaxaaaa
1ml6_A_1781ml6   A185194SRISSLPNVKHHHHHSHHHHaaaaapaaaa
1mla_*_531mla   -5362AEELNKTWQTHHHHTSHHHHaaaaaxaaaa
1mlw_A_2781mlw   A278287VPLLAEPSFAHHHHTSHHHHaaaaaxaaaa
1mq4_A_3741mq4   A375384REVLEHPWITHHHHT-HHHHaaaaaxaaaa
1mwq_A_681mwq   A7382DWAAQDPYVEHHHHT-HHHHaaaaapaaaa
1n3l_A_3061n3l   A325334REKFNTPALKHHHTTSHHHHaaaaaxaaaa
1n45_A_221n45   A2635TQAENAEFMRHHHHHSHHHHaaaaaxaaaa
1n9e_A_1761n9e   A187196NKNLNTTIMRHHHHTSHHHHaaaaaxaaaa
1nhd_A_1791nhd   A179188EETKNNKRYNHHHHT-HHHHaaaaapaaaa
1nm2_A_501nm2   A5059ADEIRDTSVAHHHHT-HHHHaaaaapaaaa
1nq7_A_2551nq7   A275284EFAKRITGFMHHHHT-HHHHaaaaaxaaaa
1nt4_A_2361nt4   A249258DSLFTSPEVAHHHH-SHHHHaaaaapaaaa
1nvu_S_8681nvu   S875884VSAMNSSPVYHHHHTSHHHHaaaaaxaaaa
1nz6_A_471nz6   A5766AVLVVHPDKAHHHHS-HHHHaaaaapaaaa
1ocs_A_1211ocs   A136145QSVAGHPLLQHHHHT-HHHHaaaaaxaaaa
1okt_A_1841okt   A191200EFISNLPNIKHHHHTSHHHHaaaaaxaaaa
1olp_A_1141olp   A128137FGDLNTPYHAHHHHTSHHHHaaaaaxaaaa
1omw_A_551omw   A5665EKIFSQKLGYHHHHTSHHHHaaaaabaaaa
1on3_A_4601on3   A472481QNAFNTPYVAHHHHSSHHHHaaaaabaaaa
1qwi_A_1111qwi   A120129KAKAGCPVSQHHHHHSHHHHaaaaaxaaaa
1r42_A_4001r42   A409418SLSAATPKHLHHHHHSHHHHaaaaapaaaa
1rgy_A_2801rgy   A283292IINGSDSKVAHHHHTSHHHHaaaaaxaaaa
1rtx_A_1021rtx   A109118AAVAGAPAHKHHHHT-HHHHaaaaaxaaaa
1s4n_A_3331s4n   A333342LNLWRSPAYRHHHHTSHHHHaaaaaxaaaa
1toh_*_3371toh   -337346VPMLADRTFAHHHHTSHHHHaaaaaxaaaa
1ujk_A_791ujk   A8291HDEVGKFRFLHHHHTSHHHHaaaaabaaaa
1up8_A_1831up8   A191200DQLNGLEWFNHHHHTSHHHHaaaaabaaaa
1urs_A_2991urs   A306315VQALTSAQAQHHHHTSHHHHaaaaaxaaaa
1urs_A_3291urs   A329338LSVQRSSAVQHHHHTSHHHHaaaaaxaaaa
1v8k_A_1871v8k   A196205FLLKNQPRYRHHHHTSHHHHaaaaaxaaaa
2dnj_A_132dnj   A1322ETKMSNATLAHHHHT-HHHHaaaaaxaaaa
2fhe_A_1732fhe   A180189SRIEALPSIKHHHHTSHHHHaaaaaxaaaa
2gsq_*_1752gsq   -182191KRVAECPKIAHHHHTSHHHHaaaaaxaaaa
2ts1_*_1452ts1   -146155NYMMAKESVQHHHHTSHHHHaaaaaxaaaa
4lip_D_1604lip   D163172ALKTLTTAQAHHHHTSHHHHaaaaaxaaaa
5csm_A_65csm   A615PETVLNLQNIHHHHS-HHHHaaaaaxaaaa
8dfr_*_938dfr   -97106LALLDSPELKHHHHHSHHHHaaaaaxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1aqu_A_2171aqu   A     A3PADENOSINE-3'-5'-DIPHOSPHATE T - 227
1aqu_A_2171aqu   A     A3PADENOSINE-3'-5'-DIPHOSPHATE S - 228
1aqu_A_2171aqu   A     A3PADENOSINE-3'-5'-DIPHOSPHATE F - 229
1aqu_A_2171aqu   A     A3PADENOSINE-3'-5'-DIPHOSPHATE Q - 230
1aqu_A_2171aqu   A     A3PADENOSINE-3'-5'-DIPHOSPHATE M - 232
1aqw_A_1741aqw   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID K - 188
1aqw_A_1741aqw   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID F - 192
1b4p_A_1781b4p   A     GPS(9S,10S)-9-(S-GLUTATHIONYL)-10-HYDROXY-9,10-DIHYDROPHENANTHRENE K - 192
1b4p_A_1781b4p   A     GPS(9S,10S)-9-(S-GLUTATHIONYL)-10-HYDROXY-9,10-DIHYDROPHENANTHRENE Y - 196
1fg7_A_2471fg7   A     MSESELENOMETHIONINE A - 256
1fg7_A_2471fg7   A     MSESELENOMETHIONINE Q - 260
1fg7_A_2471fg7   A     MSESELENOMETHIONINE G - 261
1fg7_A_2471fg7   A     MSESELENOMETHIONINE I - 262
1fg7_A_2471fg7   A     MSESELENOMETHIONINE V - 263
1fmj_A_2721fmj   A     HGMERCURY (II) ION Q - 276
1fmj_A_2721fmj   A     HGMERCURY (II) ION L - 278
1fmj_A_2721fmj   A     HGMERCURY (II) ION C - 279
1fmj_A_2721fmj   A     HGMERCURY (II) ION E - 280
1fmj_A_2721fmj   A     A3PADENOSINE-3'-5'-DIPHOSPHATE L - 282
1fmj_A_2721fmj   A     A3PADENOSINE-3'-5'-DIPHOSPHATE N - 283
1fmj_A_2721fmj   A     A3PADENOSINE-3'-5'-DIPHOSPHATE F - 284
1fmj_A_2721fmj   A     A3PADENOSINE-3'-5'-DIPHOSPHATE F - 287
1fmj_A_2721fmj   A     A3PADENOSINE-3'-5'-DIPHOSPHATE K - 288
1fp1_D_1341fp1   D     HCC2',4,4'-TRIHYDROXYCHALCONE F - 135
1fp1_D_1341fp1   D     HCC2',4,4'-TRIHYDROXYCHALCONE F - 138
1fp2_A_1121fp2   A     HMO4'-HYDROXY-7-METHOXYISOFLAVONE C - 117
1fp2_A_1121fp2   A     HMO4'-HYDROXY-7-METHOXYISOFLAVONE V - 118
1fp2_A_1121fp2   A     HMO4'-HYDROXY-7-METHOXYISOFLAVONE L - 119
1fp2_A_1121fp2   A     HMO4'-HYDROXY-7-METHOXYISOFLAVONE D - 120
1fp2_A_1121fp2   A     HMO4'-HYDROXY-7-METHOXYISOFLAVONE L - 123
1fp2_A_1121fp2   A     HMO4'-HYDROXY-7-METHOXYISOFLAVONE S - 124
1fp2_A_1121fp2   A     HMO4'-HYDROXY-7-METHOXYISOFLAVONE G - 125
1gkz_A_841gkz   A     XEXENON Y - 99
1gkz_A_841gkz   A     XEXENON A - 102
1gkz_A_841gkz   A     XEXENON L - 106
1gxs_B_2911gxs   B     NAGN-ACETYL-D-GLUCOSAMINE L - 298
1gxs_B_2911gxs   B     NAGN-ACETYL-D-GLUCOSAMINE N - 299
1gxs_B_2911gxs   B     NAGN-ACETYL-D-GLUCOSAMINE Q - 304
1ivy_A_3071ivy   A     NAGN-ACETYL-D-GLUCOSAMINE T - 307
1ivy_A_3071ivy   A     NAGN-ACETYL-D-GLUCOSAMINE A - 308
1iw0_A_81iw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 9
1iw0_A_81iw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 12
1iw0_A_81iw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 13
1iw0_A_81iw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 16
1iw0_A_81iw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 20
1iw0_A_81iw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 23
1iw0_A_81iw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 24
1iw0_A_81iw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 29
1iw0_A_81iw0   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 33
1j02_A_131j02   A     HEMPROTOPORPHYRIN IX CONTAINING FE S - 14
1j02_A_131j02   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 17
1j02_A_131j02   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 18
1j02_A_131j02   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 21
1j02_A_131j02   A     NMONITROGEN MONOXIDE V - 24
1j02_A_131j02   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 25
1j02_A_131j02   A     NMONITROGEN MONOXIDE H - 25
1j02_A_131j02   A     NMONITROGEN MONOXIDE R - 27
1j02_A_131j02   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 28
1j02_A_131j02   A     HEMPROTOPORPHYRIN IX CONTAINING FE E - 29
1j02_A_131j02   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 30
1j02_A_131j02   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 34
1j02_A_131j02   A     HEMPROTOPORPHYRIN IX CONTAINING FE Q - 38
1kho_A_1141kho   A     ZNZINC ION H - 126
1kho_A_1141kho   A     ZNZINC ION Y - 127
1kho_A_1141kho   A     ZNZINC ION G - 129
1kho_A_1141kho   A     ZNZINC ION D - 130
1kho_A_1141kho   A     ZNZINC ION T - 133
1kho_A_1141kho   A     ZNZINC ION Y - 135
1kho_A_1141kho   A     ZNZINC ION H - 136
1kiy_A_291kiy   A     EDO1,2-ETHANEDIOL L - 55
1kyz_A_1251kyz   A     FER3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID L - 127
1kyz_A_1251kyz   A     FER3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID M - 130
1kyz_A_1251kyz   A     FER3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID N - 131
1kyz_A_1251kyz   A     FER3-(4-HYDROXY-3-METHOXYPHENYL)-2-PROPENOIC ACID L - 136
1mwq_A_681mwq   A     MSESELENOMETHIONINE L - 68
1mwq_A_681mwq   A     ZNZINC ION Y - 80
1n45_A_221n45   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 35
1n9e_A_1761n9e   A     NAGN-ACETYL-D-GLUCOSAMINE N - 187
1n9e_A_1761n9e   A     NAGN-ACETYL-D-GLUCOSAMINE N - 191
1n9e_A_1761n9e   A     NAGN-ACETYL-D-GLUCOSAMINE R - 196
1nm2_A_501nm2   A     NINICKEL (II) ION A - 50
1nm2_A_501nm2   A     NINICKEL (II) ION D - 51
1nm2_A_501nm2   A     NINICKEL (II) ION E - 52
1nq7_A_2551nq7   A     ARL7-(3,5-DITERT-BUTYLPHENYL)-3-METHYLOCTA-2,4,6-TRIENOIC ACID C - 262
1nq7_A_2551nq7   A     ARL7-(3,5-DITERT-BUTYLPHENYL)-3-METHYLOCTA-2,4,6-TRIENOIC ACID Q - 265
1nq7_A_2551nq7   A     ARL7-(3,5-DITERT-BUTYLPHENYL)-3-METHYLOCTA-2,4,6-TRIENOIC ACID I - 266
1nq7_A_2551nq7   A     ARL7-(3,5-DITERT-BUTYLPHENYL)-3-METHYLOCTA-2,4,6-TRIENOIC ACID A - 269
1nq7_A_2551nq7   A     ARL7-(3,5-DITERT-BUTYLPHENYL)-3-METHYLOCTA-2,4,6-TRIENOIC ACID Y - 272
1nt4_A_2361nt4   A     G1PALPHA-D-GLUCOSE-1-PHOSPHATE Y - 247
1nt4_A_2361nt4   A     G1PALPHA-D-GLUCOSE-1-PHOSPHATE Q - 248
1nt4_A_2361nt4   A     G1PALPHA-D-GLUCOSE-1-PHOSPHATE L - 251
1nt4_A_2361nt4   A     G1PALPHA-D-GLUCOSE-1-PHOSPHATE F - 252
1nz6_A_471nz6   A     MSESELENOMETHIONINE K - 56
1nz6_A_471nz6   A     MSESELENOMETHIONINE A - 57
1nz6_A_471nz6   A     MSESELENOMETHIONINE V - 60
1nz6_A_471nz6   A     MSESELENOMETHIONINE V - 61
1qwi_A_1111qwi   A     MSESELENOMETHIONINE I - 117
1qwi_A_1111qwi   A     MSESELENOMETHIONINE K - 120
1qwi_A_1111qwi   A     MSESELENOMETHIONINE A - 121
1r42_A_4001r42   A     ZNZINC ION H - 401
1r42_A_4001r42   A     ZNZINC ION E - 402
1r42_A_4001r42   A     ZNZINC ION G - 405
1r42_A_4001r42   A     NAGN-ACETYL-D-GLUCOSAMINE K - 416
1r42_A_4001r42   A     NAGN-ACETYL-D-GLUCOSAMINE H - 417
1r42_A_4001r42   A     NAGN-ACETYL-D-GLUCOSAMINE S - 420
1rtx_A_1021rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 111
1rtx_A_1021rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 112
1rtx_A_1021rtx   A     CDCADMIUM ION A - 116
1rtx_A_1021rtx   A     CDCADMIUM ION H - 117
1rtx_A_1021rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 117
1rtx_A_1021rtx   A     CDCADMIUM ION R - 119
1rtx_A_1021rtx   A     CDCADMIUM ION D - 120
1rtx_A_1021rtx   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 121
1ujk_A_791ujk   A     SEPPHOSPHOSERINE F - 88
1ujk_A_791ujk   A     SEPPHOSPHOSERINE R - 89
1ujk_A_791ujk   A     SEPPHOSPHOSERINE N - 92
1ujk_A_791ujk   A     IODIODIDE ION E - 93
1ujk_A_791ujk   A     IODIODIDE ION K - 96
2dnj_A_132dnj   A     NAGN-ACETYL-D-GLUCOSAMINE N - 18
2dnj_A_132dnj   A     NAGN-ACETYL-D-GLUCOSAMINE A - 19
2dnj_A_132dnj   A     NAGN-ACETYL-D-GLUCOSAMINE T - 20
2dnj_A_132dnj   A     NAGN-ACETYL-D-GLUCOSAMINE L - 21
4lip_D_1604lip   D     CCPBUTYLPHOSPHONATE L - 167
8dfr_*_938dfr   *     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 93
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1olp_A_1141olp   A BC2ZN BINDING SITE FOR CHAIN AH - 126
1olp_A_1141olp   A AC9ZN BINDING SITE FOR CHAIN AD - 130
1olp_A_1141olp   A BC1ZN BINDING SITE FOR CHAIN AH - 136
5csm_A_65csm   A ACTACTIVE SITE.L - 12
5csm_A_65csm   A ACTACTIVE SITE.R - 16
5csm_A_65csm   A ACTACTIVE SITE.L - 19

Clusters included in this Subclass
CLUSTER: HH.0.28
CLUSTER: HH.1.15
CLUSTER: HH.1.22
CLUSTER: HH.1.60
CLUSTER: HH.2.242
CLUSTER: HH.2.26
CLUSTER: HH.3.21
CLUSTER: HH.3.22
CLUSTER: HH.3.90