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Information on SUBCLASS 2.3.1
Subclass Accession number: 133
Subclass: 2.3.1 PSSM
Type: HE alpha-beta
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 57

Average sequence ID (%) : 14.4 +/- 16.6
Average RMSD (Å) : 0.565 +/- 0.213

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XXXpXX
(φψ)-conformation: aapabb
Pattern: [adeknrst]x[acfgiklmtv][adegknqrs]xx[dehknpqrst]x[acfgiklmtv][acfilmvwy]
Conservation:-0.599-1.275-0.5370.146-0.8580.8451.983-0.7530.2030.845
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a8i_*_4411a8i   -444453LCIAGSHAVNHHHHT-SEEEaaaaababbb
1b0u_A_2131b0u   A215224FARHVSSHVIHHHHH-SEEEaaaaaxabbb
1b35_C_1061b35   C109118KVANAFTYWRHHHTT-SEEEaaaaababbb
1b9m_A_1931b9m   A194203AVAQNADNQLHHHHTSSEEEaaaaaxabbb
1bup_A_811bup   A8594SDMKHWPFMVHHHTT-SSEEaaaaaxaxxb
1bx4_A_1531bx4   A157166MLVEKARVCYHHHHH-SEEEaaaaaxabbb
1cbf_*_381cbf   -4251KLLQQADVVLHHHHH-SEEEaaaaapabbb
1cbu_A_1041cbu   A120129AACQRCPAKVHHHHH--SEEaaaaaxaxxx
1cbu_A_1451cbu   A160169RLAAAADEVWHHHHH-SEEEaaaaaxabbb
1cg2_A_1831cg2   A188197EEAKLADYVLHHHHH-SEEEaaaaaxabbb
1cnz_A_591cnz   A6372EGCEQADAILHHHHTSSEEEaaaaababbx
1cr1_A_4901cr1   A491500ALRQLSDTIIHHHHH-SEEEaaaaaxabbb
1d2n_A_5861d2n   A598607DDAYKSQLSCHHHHTSSEEEaaaaababbb
1di6_A_841di6   A8795ATLAVADRE.HHHHT-SEE.aaaaaxabx.
1dlj_A_3671dlj   A369378NFKKQANIIVHHHHH-SEEEaaaaaxabbb
1dlj_A_671dlj   A6978AAYKEAELVIHHHHH-SEEEaaaaaxabbb
1dqn_A_1091dqn   A113122KQLKEKREVVHHHHH-SSEEaaaaaxabbb
1f0k_A_1331f0k   A137146WLAKIATKVMHHTTT-SEEEaaaaaxabbb
1f5n_A_1121f5n   A118127LAVLLSSTFVHHHHH-SEEEaaaaaxabbb
1g5t_A_1651g5t   A166175DILDLADTVSHHHHH-SEEEaaaaaxabbb
1gpj_A_2211gpj   A223232DHLARSDVVVHHHHT-SEEEaaaaababbb
1gv8_A_1511gv8   A154163AVAKFFSASCHHHTTSSEEEaaaaaxabbb
1icr_A_721icr   A7382RKMLDASHVVHHHHHSSEEEaaaaaxabbb
1izo_A_1051izo   A124133TRWEKADEVVHHHTTSSEEEaaaaaxabbb
1jf8_A_691jf8   A7079DILKQSDLVVHHHHH-SEEEaaaaaxabbb
1jjf_A_2131jjf   A214223AAREKLKLLFHHHHH-SEEEaaaaaxabbb
1jlj_A_961jlj   A99107ATKEVIERE.HHHHH-SEE.aaaaaxabx.
1jnd_A_2071jnd   A209218ALNGLVDFVNHHHTT-SEEEaaaaababbb
1jw9_B_1121jw9   B117126ALIAEHDLVLHHHHTSSEEEaaaaababbb
1kfs_A_3361kfs   A344353AKLEKAPVFAHHHHHSSSEEaaaaaxabbx
1ks9_A_581ks9   A5968DFLATSDLLLHHHHT-SEEEaaaaaxabbb
1l3i_A_461l3i   A5059ELAGRVRRVYHHHTTSSEEEaaaaababbb
1m3s_A_1181m3s   A118127SIGKQADLIIHHHHH-SEEEaaaaaxabbb
1mdw_A_3281mdw   A330339DFLRHYSRLEHHHHH--EEEaaaaaxabbb
1moq_*_3801moq   -380389SLVRESDLALHHHHHSSEEEaaaaaxabbb
1mv8_A_3841mv8   A386395EVVASSDVLVHHHHH-SEEEaaaaababbb
1mv8_A_701mv8   A7281KAVLDSDVSFHHHHT-SEEEaaaaababbx
1nm8_A_2491nm8   A256265RSIQKSIFTVHHHHHSS-EEaaaaapabbb
1np3_A_661np3   A6877TAVAAADVVMHHHHT-SEEEaaaaababbx
1nw3_A_2261nw3   A230239ERIANTSVIFHHHHH-SEEEaaaaaxabbb
1nye_D_7461nye   D746755PVSQVLKAEIHHHHH--SEEaaaaaxaxxb
1psw_A_2521psw   A257266ILIAACKAIVHHHHTSS-EEaaaaaxabbb
1psz_A_731psz   A7786KKTSEADLIFHHHHH-SEEEaaaaaxabbb
1q7e_A_871q7e   A8796KLIREADILVHHHHH-SEEEaaaaaxabbb
1qmg_A_1861qmg   A188197ETISGSDLVLHHHHT-SEEEaaaaaxabbb
1r0w_A_6071r0w   A608617EHLRKADKILHHHHT-SEEEaaaaaxabbb
1r6l_A_1781r6l   A179188LEDSAAETDLHHHHH-SEEEaaaaaxabbb
1rkd_*_1291rkd   -130139ERIANASALLHHHHH-SEEEaaaaaxabbb
1toa_A_741toa   A7887EWLGNADLILHHHHH-SEEEaaaaaxabbb
1uqt_A_3411uqt   A346355KIFRYSDVGLHHHHH-SEEEaaaaaxabbb
1uu1_A_851uu1   A91100VMMLMFDRSVHHHHHSSEEEaaaaababbb
1v4v_A_1361v4v   A142151LTDVLTDLDFHHHHH-SEEEaaaaaxabbb
1vfr_A_751vfr   A7584PHIKACSHVIHHHHHSSEEEaaaaaxabbb
1vhv_A_171vhv   A2130EAVREADEVYHHHHH-SEEEaaaaaxabbb
1vim_A_1161vim   A116125SLAKMADVVMHHHHH-SEEEaaaaaxabbx
1vim_A_211vim   A2938KLIDSARSIFHHHHHSS-EEaaaaaxabbb
1vrt_A_5161vrt   A523532EQLIKKEKVYHHHHH-SEEEaaaaaxabbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b0u_A_2131b0u   A     ATPADENOSINE-5'-TRIPHOSPHATE L - 226
1b9m_A_1931b9m   A     MSESELENOMETHIONINE L - 203
1b9m_A_1931b9m   A     MSESELENOMETHIONINE P - 204
1b9m_A_1931b9m   A     MSESELENOMETHIONINE G - 205
1b9m_A_1931b9m   A     MSESELENOMETHIONINE I - 206
1bx4_A_1531bx4   A     MO6MAGNESIUM ION, 6 WATERS COORDINATED Y - 166
1cr1_A_4901cr1   A     TTPTHYMIDINE-5'-TRIPHOSPHATE R - 504
1dlj_A_671dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE S - 67
1dlj_A_671dlj   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE Y - 71
1dqn_A_1091dqn   A     MGMAGNESIUM ION D - 125
1dqn_A_1091dqn   A     IMUPHOSPHORIC ACID MONO-[5-(2-AMINO-4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-3,4-DIHYDROXY-PYRROLIDIN -2-YLMETHYL] ESTER D - 125
1dqn_A_1091dqn   A     POPPYROPHOSPHATE 2- D - 125
1dqn_A_1091dqn   A     MGMAGNESIUM ION E - 126
1dqn_A_1091dqn   A     IMUPHOSPHORIC ACID MONO-[5-(2-AMINO-4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-3,4-DIHYDROXY-PYRROLIDIN -2-YLMETHYL] ESTER E - 126
1dqn_A_1091dqn   A     POPPYROPHOSPHATE 2- E - 126
1dqn_A_1091dqn   A     MGMAGNESIUM ION Y - 127
1dqn_A_1091dqn   A     IMUPHOSPHORIC ACID MONO-[5-(2-AMINO-4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-3,4-DIHYDROXY-PYRROLIDIN -2-YLMETHYL] ESTER Y - 127
1dqn_A_1091dqn   A     IMUPHOSPHORIC ACID MONO-[5-(2-AMINO-4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-3,4-DIHYDROXY-PYRROLIDIN -2-YLMETHYL] ESTER V - 128
1f5n_A_1121f5n   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER N - 129
1f5n_A_1121f5n   A     GNPPHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER I - 131
1icr_A_721icr   A     FMNFLAVIN MONONUCLEOTIDE K - 74
1izo_A_1051izo   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 111
1kfs_A_3361kfs   A     ZNZINC ION D - 355
1kfs_A_3361kfs   A     MGMAGNESIUM ION D - 355
1kfs_A_3361kfs   A     ZNZINC ION T - 356
1kfs_A_3361kfs   A     MGMAGNESIUM ION T - 356
1kfs_A_3361kfs   A     ZNZINC ION E - 357
1kfs_A_3361kfs   A     MGMAGNESIUM ION E - 357
1l3i_A_461l3i   A     SAHS-ADENOSYL-L-HOMOCYSTEINE G - 46
1l3i_A_461l3i   A     MSESELENOMETHIONINE V - 47
1l3i_A_461l3i   A     SAHS-ADENOSYL-L-HOMOCYSTEINE V - 47
1l3i_A_461l3i   A     MSESELENOMETHIONINE E - 50
1l3i_A_461l3i   A     MSESELENOMETHIONINE L - 51
1l3i_A_461l3i   A     MSESELENOMETHIONINE A - 52
1l3i_A_461l3i   A     MSESELENOMETHIONINE R - 54
1l3i_A_461l3i   A     MSESELENOMETHIONINE Y - 59
1l3i_A_461l3i   A     MSESELENOMETHIONINE A - 60
1l3i_A_461l3i   A     MSESELENOMETHIONINE I - 61
1l3i_A_461l3i   A     SAHS-ADENOSYL-L-HOMOCYSTEINE I - 61
1moq_*_3801moq   *     GLPGLUCOSAMINE 6-PHOSPHATE L - 381
1nw3_A_2261nw3   A     ACTACETATE ION W - 228
1nw3_A_2261nw3   A     ACTACETATE ION R - 231
1nw3_A_2261nw3   A     ACTACETATE ION I - 232
1nw3_A_2261nw3   A     ACTACETATE ION N - 234
1nw3_A_2261nw3   A     ACTACETATE ION T - 235
1nw3_A_2261nw3   A     SAMS-ADENOSYLMETHIONINE F - 239
1psw_A_2521psw   A     MSESELENOMETHIONINE L - 258
1psw_A_2521psw   A     MSESELENOMETHIONINE A - 261
1psw_A_2521psw   A     MSESELENOMETHIONINE C - 262
1psw_A_2521psw   A     MSESELENOMETHIONINE K - 263
1psw_A_2521psw   A     MSESELENOMETHIONINE A - 264
1psw_A_2521psw   A     MSESELENOMETHIONINE T - 267
1psw_A_2521psw   A     MSESELENOMETHIONINE N - 268
1q7e_A_871q7e   A     MSESELENOMETHIONINE K - 87
1q7e_A_871q7e   A     MPD2-METHYL-2,4-PENTANEDIOL K - 87
1q7e_A_871q7e   A     MSESELENOMETHIONINE L - 88
1q7e_A_871q7e   A     MPD2-METHYL-2,4-PENTANEDIOL L - 88
1q7e_A_871q7e   A     MSESELENOMETHIONINE I - 89
1q7e_A_871q7e   A     MPD2-METHYL-2,4-PENTANEDIOL I - 89
1q7e_A_871q7e   A     MSESELENOMETHIONINE R - 90
1q7e_A_871q7e   A     MPD2-METHYL-2,4-PENTANEDIOL E - 91
1q7e_A_871q7e   A     MPD2-METHYL-2,4-PENTANEDIOL A - 92
1q7e_A_871q7e   A     MSESELENOMETHIONINE L - 95
1qmg_A_1861qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE M - 186
1qmg_A_1861qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE W - 187
1qmg_A_1861qmg   A     APX2'-MONOPHOSPHOADENOSINE-5'-DIPHOSPHORIBOSE L - 198
1r6l_A_1781r6l   A     MSESELENOMETHIONINE T - 186
1r6l_A_1781r6l   A     MSESELENOMETHIONINE D - 187
1r6l_A_1781r6l   A     MSESELENOMETHIONINE L - 188
1r6l_A_1781r6l   A     MSESELENOMETHIONINE V - 190
1uqt_A_3411uqt   A     U2FURIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GALACTOSE R - 341
1uqt_A_3411uqt   A     U2FURIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GALACTOSE L - 344
1uqt_A_3411uqt   A     U2FURIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GALACTOSE M - 345
1uqt_A_3411uqt   A     U2FURIDINE-5'-DIPHOSPHATE-2-DEOXY-2-FLUORO-ALPHA-D-GALACTOSE F - 348
1uu1_A_851uu1   A     PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE A - 85
1uu1_A_851uu1   A     PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE D - 86
1uu1_A_851uu1   A     HSAPHOSPHORIC ACID MONO-[2-AMINO-3-(3H-IMIDAZOL-4-YL)-PROPYL]ESTER D - 86
1uu1_A_851uu1   A     PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE E - 87
1uu1_A_851uu1   A     PMP4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE I - 89
1v4v_A_1361v4v   A     MSESELENOMETHIONINE F - 151
1vfr_A_751vfr   A     FMNFLAVIN MONONUCLEOTIDE H - 76
1vhv_A_171vhv   A     MSESELENOMETHIONINE V - 29
1vhv_A_171vhv   A     MSESELENOMETHIONINE Y - 30
1vhv_A_171vhv   A     MSESELENOMETHIONINE V - 31
1vim_A_211vim   A     FMTFORMIC ACID F - 38
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1kfs_A_3361kfs   A EXOEXONUCLEASE ACTIVE SITE.D - 355
1kfs_A_3361kfs   A EXOEXONUCLEASE ACTIVE SITE.E - 357
1uu1_A_851uu1   A AC1PMP BINDING SITE FOR CHAIN AA - 85
1uu1_A_851uu1   A AC1PMP BINDING SITE FOR CHAIN AD - 86

Clusters included in this Subclass
CLUSTER: HE.1.2
CLUSTER: HE.2.6
CLUSTER: HE.3.63
CLUSTER: HE.3.8
CLUSTER: HE.4.110
CLUSTER: HE.4.58
CLUSTER: HE.5.60