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Information on SUBCLASS 1.3.2
Subclass Accession number: 4463
Subclass: 1.3.2 PSSM
Type: HH alpha-alpha
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 57

Average sequence ID (%) : 13.3 +/- 16.6
Average RMSD (Å) : 0.453 +/- 0.154

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XXcXX
(φψ)-conformation: aalaa
Pattern: xx[afgilmv]x[adeknqrst][adeknqrst][dgknqr]xx[adegnpqst]x[acfilmtv]
Conservation:-0.492-0.5890.682-0.5650.235-0.2601.345-0.859-0.707-0.485-0.6992.395
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a77_*_2351a77   -239250YELVRSGVAKDVHHHHHTT-HHHHaaaaaavaaaaa
1am7_A_881am7   A97108QQIKERGALPMIHHHHHTT-HHHHaaaaaavaaaaa
1amf_*_1241amf   -131142EALQKLGAWDTLHHHHHTT-HHHHaaaaaavaaaaa
1apx_A_101apx   A2536GFIAEKKCAPLIHHHHHHT-HHHHaaaaaalaaaaa
1atg_*_1171atg   -124135QVLTHLGLLDKLHHHHHTT-HHHHaaaaaavaaaaa
1b79_A_831b79   A8899ESLERQGQLDSVHHHHTTTTHHHHaaaaaavaaaaa
1be4_A_131be4   A1324PDGVQRGLMGEIHHHHHTT-HHHHaaaaaavaaaaa
1bfd_*_2091bfd   -209220PDVDAANANADCHHHHHHT-HHHHaaaaaalaaaaa
1bu6_O_1091bu6   O113124EHLKRDGLEDYIHHHHHTTTHHHHaaaaaavaaaaa
1d4o_A_311d4o   A3142YGLCAAKAQYPIHHHHHTTTHHHHaaaaaalaaaaa
1dmh_A_521dmh   A6374NQLGANQEAGLLHHHHHTT-HHHHaaaaaalaaaaa
1ehw_A_131ehw   A1324PDGVQRRLVGDVHHHHHTT-HHHHaaaaaalaaaaa
1fye_A_901fye   A95106KESRERGLLAPMHHHHHTT-HHHHaaaaaavaaaaa
1hlw_A_171hlw   A1728PDGVARGLVGEIHHHHHTT-HHHHaaaaaavaaaaa
1hn0_A_4051hn0   A406417DALKEANLQTQVHHHHHTT-HHHHaaaaaavaaaaa
1htr_P_131htr   P1526ETMKEKGLLGEFHHHHHTT-HHHHaaaaaavaaaaa
1ia6_A_821ia6   A8394ESFDATGNTTKMHHHHHTT-HHHHaaaaaavaaaaa
1io7_A_2111io7   A223234IDFTRFNLWQRIHHHHHTT-HHHHaaaaaalaaaaa
1iyn_A_41iyn   A1728ELLKTKFCHPIMHHHHHH--HHHHaaaaaalaaaaa
1j23_A_521j23   A5667IQSIIDGGLFDQHHHHHTT-HHHHaaaaaavaaaaa
1j8f_A_3241j8f   A330341ALAELLGWKKELHHHHHTT-HHHHaaaaaavaaaaa
1jj2_C_1501jj2   C155166SLLEALDVHADIHHHHHTT-HHHHaaaaaalaaaaa
1jj7_A_6091jj7   A614625AAAVKSGAHSFIHHHHHHT-HHHHaaaaaavaaaaa
1jqn_A_7341jqn   A739750QKVVEDGKQSELHHHHTTT-HHHHaaaaaavaaaaa
1jr2_A_641jr2   A7283LCLEQNNKTEVWHHHHHTT-HHHHaaaaaavaaaaa
1kv5_A_1311kv5   A131142LQERESGRTAVVHHHHHTT-HHHHaaaaaavaaaaa
1m6j_A_1381m6j   A138149EAQRIANQTEEVHHHHHTT-HHHHaaaaaalaaaaa
1mo0_A_1301mo0   A130141LEEREAGHTKDVHHHHHTT-HHHHaaaaaavaaaaa
1mq4_A_1661mq4   A167178AQLEKAGVEHQLHHHHHHT-HHHHaaaaaavaaaaa
1n40_A_851n40   A8798GNIADAGLRKAVHHHHHTT-HHHHaaaaaavaaaaa
1n55_A_1311n55   A131142LQQREANQTAKVHHHHHTT-HHHHaaaaaavaaaaa
1nb2_A_111nb2   A1122PDGVQRNLVGEVHHHHHTT-HHHHaaaaaaUaaaaa
1ney_A_1311ney   A131142LEEKKAGKTLDVHHHHHTT-HHHHaaaaaavaaaaa
1nhk_L_121nhk   L1223PDGLEKGVIGKIHHHHHTT-HHHHaaaaaavaaaaa
1nue_A_131nue   A1324PDGVQRGLVGEIHHHHHTT-HHHHaaaaaavaaaaa
1o5x_A_1311o5x   A131142LEQREQNKTIEVHHHHHTT-HHHHaaaaaavaaaaa
1o6l_A_1851o6l   A186197EVIIAKDEVAHTHHHHHTT-HHHHaaaaaalaaaaa
1o94_A_5661o94   A566577NYMHFTLEYPNMHHHHHTT-HHHHaaaaaavaaaaa
1oaf_A_101oaf   A2536GFIAEKRCAPLMHHHHHHT-HHHHaaaaaavaaaaa
1omw_A_2241omw   A225236KRIKMKQGETLAHHHHHHT-HHHHaaaaaalaaaaa
1ozj_A_251ozj   A4051KKLKKTGQLDELHHHHHTT-HHHHaaaaaalaaaaa
1pa1_A_5021pa1   A508519EQIDKSGSWAAIHHHHHHT-HHHHaaaaaavaaaaa
1pfz_A_891pfz   A95106KTIKTHKLKNYIHHHHHTT-HHHHaaaaaalaaaaa
1pn0_A_581pn0   A6273ESLKNLGLADKIHHHHTTT-HHHHaaaaaavaaaaa
1pno_A_3161pno   A316327YGMAVAQAQHALHHHHHHT-HHHHaaaaaalaaaaa
1q1s_C_1121q1s   C113124DNIIRAGLIPKFHHHHHTT-HHHHaaaaaavaaaaa
1q1s_C_3671q1s   C371382QQVVNHGLVPFLHHHHHTT-HHHHaaaaaavaaaaa
1qde_A_1711qde   A172183DEMLSSGFKEQIHHHHHTT-HHHHaaaaaavaaaaa
1r0w_A_5141r0w   A519530SVVKACQLQQDIHHHHHTT-HHHHaaaaaavaaaaa
1r2r_A_1311r2r   A131142LDEREAGITEKVHHHHHTT-HHHHaaaaaavaaaaa
1rdq_E_761rdq   E7788QKVVKLKQIEHTHHHHHTT-HHHHaaaaaavaaaaa
1tcd_A_1321tcd   A132143NEEREAGRTAAVHHHHHTT-HHHHaaaaaavaaaaa
1upa_A_2251upa   A225236AAAIRSGAVPAIHHHHHTT-HHHHaaaaaavaaaaa
1uu3_A_1151uu3   A116127RHIIKENKVPYVHHHHHTT-HHHHaaaaaalaaaaa
1wer_*_7491wer   -758769RIFLHEKLESLLHHHHHTT-HHHHaaaaaavaaaaa
2btm_A_1302btm   A130141LEEREAGQTNAVHHHHHTT-HHHHaaaaaalaaaaa
3psg_*_123psg   -1425QNLIKDGKLKDFHHHHHTT-HHHHaaaaaalaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1am7_A_881am7   A     TRNNZ2-TRYPTOPHAN S - 90
1am7_A_881am7   A     TRNNZ2-TRYPTOPHAN Q - 91
1am7_A_881am7   A     TRNNZ2-TRYPTOPHAN V - 94
1am7_A_881am7   A     TRNNZ2-TRYPTOPHAN A - 95
1am7_A_881am7   A     TRNNZ2-TRYPTOPHAN L - 96
1am7_A_881am7   A     TRNNZ2-TRYPTOPHAN Q - 98
1am7_A_881am7   A     TRNNZ2-TRYPTOPHAN I - 99
1amf_*_1241amf   *     MOOMOLYBDATE ION P - 124
1amf_*_1241amf   *     MOOMOLYBDATE ION A - 125
1amf_*_1241amf   *     MOOMOLYBDATE ION G - 126
1amf_*_1241amf   *     MOOMOLYBDATE ION Y - 128
1apx_A_101apx   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 33
1apx_A_101apx   A     HEMPROTOPORPHYRIN IX CONTAINING FE P - 34
1apx_A_101apx   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 35
1apx_A_101apx   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 37
1apx_A_101apx   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 38
1apx_A_101apx   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 41
1apx_A_101apx   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 42
1atg_*_1171atg   *     WO4TUNGSTATE(VI)ION P - 117
1atg_*_1171atg   *     WO4TUNGSTATE(VI)ION Y - 118
1atg_*_1171atg   *     WO4TUNGSTATE(VI)ION G - 119
1d4o_A_311d4o   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Y - 31
1d4o_A_311d4o   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 32
1d4o_A_311d4o   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 33
1d4o_A_311d4o   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 35
1d4o_A_311d4o   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 36
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE D - 53
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE E - 54
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE Y - 55
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE A - 57
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE G - 58
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE V - 59
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE Y - 61
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE L - 62
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE Q - 64
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE L - 65
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE A - 71
1dmh_A_521dmh   A     MCT4-METHYLCATECHOL G - 72
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE G - 72
1dmh_A_521dmh   A     MCT4-METHYLCATECHOL L - 73
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE L - 74
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE S - 75
1dmh_A_521dmh   A     MCT4-METHYLCATECHOL P - 76
1dmh_A_521dmh   A     MCT4-METHYLCATECHOL G - 77
1io7_A_2111io7   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 211
1io7_A_2111io7   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 213
1io7_A_2111io7   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 214
1io7_A_2111io7   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 217
1iyn_A_41iyn   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 25
1iyn_A_41iyn   A     HEMPROTOPORPHYRIN IX CONTAINING FE P - 26
1iyn_A_41iyn   A     HEMPROTOPORPHYRIN IX CONTAINING FE I - 27
1iyn_A_41iyn   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 29
1iyn_A_41iyn   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 30
1iyn_A_41iyn   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 33
1iyn_A_41iyn   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 34
1kv5_A_1311kv5   A     GOLGLYCEROL R - 134
1kv5_A_1311kv5   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE A - 140
1kv5_A_1311kv5   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE V - 141
1kv5_A_1311kv5   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE L - 144
1kv5_A_1311kv5   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE T - 145
1kv5_A_1311kv5   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE A - 148
1kv5_A_1311kv5   A     GOLGLYCEROL A - 151
1mq4_A_1661mq4   A     PO4PHOSPHATE ION H - 176
1mq4_A_1661mq4   A     PO4PHOSPHATE ION Q - 177
1mq4_A_1661mq4   A     PO4PHOSPHATE ION R - 180
1mq4_A_1661mq4   A     MGMAGNESIUM ION E - 181
1mq4_A_1661mq4   A     ADPADENOSINE-5'-DIPHOSPHATE E - 181
1n40_A_851n40   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 85
1n40_A_851n40   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 86
1n40_A_851n40   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 87
1ney_A_1311ney   A     FTRFLUOROTRYPTOPHANE L - 131
1ney_A_1311ney   A     FTRFLUOROTRYPTOPHANE E - 132
1ney_A_1311ney   A     FTRFLUOROTRYPTOPHANE E - 133
1ney_A_1311ney   A     FTRFLUOROTRYPTOPHANE K - 134
1ney_A_1311ney   A     FTRFLUOROTRYPTOPHANE T - 139
1o6l_A_1851o6l   A     TPOPHOSPHOTHREONINE H - 196
1o6l_A_1851o6l   A     ANPPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER E - 200
1o6l_A_1851o6l   A     MNMANGANESE (II) ION E - 200
1oaf_A_101oaf   A     ASCASCORBIC ACID K - 30
1oaf_A_101oaf   A     ASCASCORBIC ACID R - 31
1oaf_A_101oaf   A     ASCASCORBIC ACID C - 32
1oaf_A_101oaf   A     ASCASCORBIC ACID A - 33
1oaf_A_101oaf   A     ASCASCORBIC ACID P - 34
1oaf_A_101oaf   A     ASCASCORBIC ACID L - 35
1oaf_A_101oaf   A     ASCASCORBIC ACID M - 36
1pno_A_3161pno   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Y - 316
1pno_A_3161pno   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 317
1pno_A_3161pno   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE M - 318
1pno_A_3161pno   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 320
1pno_A_3161pno   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 321
1rdq_E_761rdq   E     TPOPHOSPHOTHREONINE H - 87
1rdq_E_761rdq   E     TPOPHOSPHOTHREONINE N - 90
1rdq_E_761rdq   E     MGMAGNESIUM ION E - 91
1rdq_E_761rdq   E     ADPADENOSINE-5'-DIPHOSPHATE E - 91
1rdq_E_761rdq   E     ATPADENOSINE-5'-TRIPHOSPHATE E - 91
1uu3_A_1151uu3   A     GOLGLYCEROL I - 118
1uu3_A_1151uu3   A     GOLGLYCEROL K - 123
1uu3_A_1151uu3   A     SEPPHOSPHOSERINE Y - 126
1uu3_A_1151uu3   A     GOLGLYCEROL Y - 126
1uu3_A_1151uu3   A     GOLGLYCEROL V - 127
1uu3_A_1151uu3   A     GOLGLYCEROL T - 128
1uu3_A_1151uu3   A     SEPPHOSPHOSERINE R - 129
1uu3_A_1151uu3   A     GOLGLYCEROL E - 130
1uu3_A_1151uu3   A     LY4(9R)-9-[(DIMETHYLAMINO)METHYL]-6,7,10,11-TETRAHYDRO-9H,18H-5,21:12,17-DIMETHENODIBENZO[E,K]PYRROLO[3,4-H] [1,4,13]OXADIAZACYCLOHEXADECINE-18,20-DIONE E - 130
1uu3_A_1151uu3   A     GOLGLYCEROL R - 131
1uu3_A_1151uu3   A     LY4(9R)-9-[(DIMETHYLAMINO)METHYL]-6,7,10,11-TETRAHYDRO-9H,18H-5,21:12,17-DIMETHENODIBENZO[E,K]PYRROLO[3,4-H] [1,4,13]OXADIAZACYCLOHEXADECINE-18,20-DIONE M - 134
1uu3_A_1151uu3   A     GOLGLYCEROL S - 135
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1amf_*_1241amf   * MO4MOLYBDATE BINDING SITE.A - 125
1atg_*_1171atg   * MOBANION-BINDING POCKET LOCATED AT THE INTERFACE BETWEEN THE 2 DOMAINS OF THE PROTEIN. BINDS BOTH MOLYBDATE AND TUNGSTATE.Y - 118
1oaf_A_101oaf   A AC1HEM BINDING SITE FOR CHAIN AP - 34
1oaf_A_101oaf   A AC1HEM BINDING SITE FOR CHAIN AW - 41
1uu3_A_1151uu3   A AC1LY4 BINDING SITE FOR CHAIN AE - 130

Clusters included in this Subclass
CLUSTER: HH.2.16
CLUSTER: HH.3.7
CLUSTER: HH.4.8