ArchDB - Biological DataBase of Protein Loops

Information on SUBCLASS 1.1.13

Subclass Accession number: 2642
Subclass: 1.1.13

Type: EH beta-alpha
DB: ArchDB95

Image coordinates:

Consensus coordinates:

Number of loops: 35

Average sequence ID (%) : 8.7 +/- 14.0
Average RMSD (Å) : 0.520 +/- 0.169

Consensus geometry

d (Å): 7

delta (°): 0-45

theta (°): 45-90

rho (°): 270-315

Consensus Sequence:	XhXXp
(φψ)-conformation:	bbpaa

Pattern:	x	[acfgilmpvy]	x	x	[cdehknqrstwy]	x	[acfgiklmtv]
Conservation:	-0.843	1.161	0.926	-1.447	0.162	-0.674	0.715

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a62_*_79	1a62	-	80	86	YVSPSQI	EE-HHHH	xbxaaaa
1a8r_A_130	1a8r	A	131	137	VIGLSKI	EE-HHHH	bxxaaaa
1af7_*_195	1af7	-	197	203	RVRQELA	EE-HHHH	bxxaaaa
1bwv_A_308	1bwv	A	308	314	GMNFRVI	EE-HHHH	ebxaaaa
1cfy_A_7	1cfy	A	7	13	AVADESL	EE-HHHH	xxpaaaa
1duw_A_33	1duw	A	34	40	VFNHLAH	EE-HHHH	bxxaaaa
1e54_A_93	1e54	A	93	99	DLVPTSQ	EE-HHHH	bxxaaaa
1ekm_A_661	1ekm	A	662	668	AMTTSEA	EE-HHHH	bbxaaaa
1f7s_A_9	1f7s	A	9	15	AVHDDCK	EE-HHHH	xbxaaaa
1fuq_A_392	1fuq	A	392	398	EPNRERI	EE-HHHH	bxxaaaa
1ges_A_368	1ges	A	375	381	FTAMYTA	EE-HHHH	bbpaaaa
1gk8_A_308	1gk8	A	308	314	GIHFRVL	EE-HHHH	ebxaaaa
1gvk_B_162	1gvk	B	162	168	TVDYAIC	EE-HHHH	xbxaaaa
1hdi_A_311	1hdi	A	314	320	DCGPKSS	EE-HHHH	bxbaaaa
1hh1_A_66	1hh1	A	67	73	YVRREQA	EE-HHHH	bbxaaaa
1kbl_A_380	1kbl	A	380	386	TFNPAAL	EE-HHHH	bxxaaaa
1mp9_A_118	1mp9	A	118	124	IVNLDKA	EE-HHHH	xbxaaaa
1msw_D_243	1msw	D	245	251	ELAPEYA	EE-HHHH	bxxaaaa
1nth_A_435	1nth	A	435	441	TPTEEYM	EE-HHHH	bxxaaaa
1nvt_A_84	1nvt	A	84	90	EIDKDAQ	EE-HHHH	bbxaaaa
1ogi_A_113	1ogi	A	113	119	VYGVCST	EE-HHHH	bbxaaaa
1oi0_A_5	1oi0	A	5	11	KISRGLL	EE-HHHH	bbxaaaa
1p9y_A_12	1p9y	A	18	24	TIAADSI	EE-HHHH	bbxaaaa
1pkh_A_110	1pkh	A	115	121	QGRSSLG	EE-HHHH	bxxaaaa
1q5n_A_350	1q5n	A	350	356	EVNAENM	EE-HHHH	bxbaaaa
1qs1_A_164	1qs1	A	164	170	TINSDAM	EE-HHHH	bxpaaaa
1r3s_A_151	1r3s	A	155	161	AGAPWTL	EE-HHHH	bxxaaaa
1rtr_A_96	1rtr	A	96	102	KLTNHKV	EE-HHHH	bxxaaaa
1s3i_A_64	1s3i	A	64	70	QALPEVV	EE-HHHH	bxxaaaa
1ual_A_61	1ual	A	61	67	LMMVQPL	EE-HHHH	bxxaaaa
1v4e_A_93	1v4e	A	93	99	KETINFM	EE-HHHH	bxpaaaa
1vdk_A_392	1vdk	A	392	398	EPNLERI	EE-HHHH	bxbaaaa
4aig_*_6	4aig	-	13	19	VADRRVF	EE-HHHH	bbxaaaa
5rub_A_302	5rub	A	302	308	GYTAFVH	EE-HHHH	ebxaaaa
8ruc_A_308	8ruc	A	308	314	GMHFRVL	EE-HHHH	ebxaaaa

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1a8r_A_130	1a8r	A	GTPGUANOSINE-5'-TRIPHOSPHATE	V - 131
1a8r_A_130	1a8r	A	GTPGUANOSINE-5'-TRIPHOSPHATE	I - 132
1a8r_A_130	1a8r	A	GTPGUANOSINE-5'-TRIPHOSPHATE	G - 133
1a8r_A_130	1a8r	A	GTPGUANOSINE-5'-TRIPHOSPHATE	L - 134
1a8r_A_130	1a8r	A	GTPGUANOSINE-5'-TRIPHOSPHATE	S - 135
1a8r_A_130	1a8r	A	GTPGUANOSINE-5'-TRIPHOSPHATE	K - 136
1a8r_A_130	1a8r	A	GTPGUANOSINE-5'-TRIPHOSPHATE	R - 139
1duw_A_33	1duw	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 33
1duw_A_33	1duw	A	HEMPROTOPORPHYRIN IX CONTAINING FE	V - 34
1duw_A_33	1duw	A	HEMPROTOPORPHYRIN IX CONTAINING FE	F - 35
1duw_A_33	1duw	A	HEMPROTOPORPHYRIN IX CONTAINING FE	N - 36
1duw_A_33	1duw	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 37
1duw_A_33	1duw	A	HEMPROTOPORPHYRIN IX CONTAINING FE	A - 39
1duw_A_33	1duw	A	HEMPROTOPORPHYRIN IX CONTAINING FE	H - 40
1duw_A_33	1duw	A	HEMPROTOPORPHYRIN IX CONTAINING FE	E - 41
1duw_A_33	1duw	A	HEMPROTOPORPHYRIN IX CONTAINING FE	K - 43
1gk8_A_308	1gk8	A	EGLETHYLENE GLYCOL	H - 310
1gk8_A_308	1gk8	A	EGLETHYLENE GLYCOL	F - 311
1gk8_A_308	1gk8	A	HYP4-HYDROXYPROLINE	L - 318
1gk8_A_308	1gk8	A	HYP4-HYDROXYPROLINE	R - 319
1gk8_A_308	1gk8	A	HYP4-HYDROXYPROLINE	M - 320
1gk8_A_308	1gk8	A	HYP4-HYDROXYPROLINE	S - 321
1hdi_A_311	1hdi	A	AMPADENOSINE MONOPHOSPHATE	M - 311
1hdi_A_311	1hdi	A	AMPADENOSINE MONOPHOSPHATE	G - 312
1hdi_A_311	1hdi	A	AMPADENOSINE MONOPHOSPHATE	L - 313
1hdi_A_311	1hdi	A	AMPADENOSINE MONOPHOSPHATE	D - 314
1ogi_A_113	1ogi	A	FADFLAVIN-ADENINE DINUCLEOTIDE	Y - 114
1ogi_A_113	1ogi	A	FADFLAVIN-ADENINE DINUCLEOTIDE	G - 115
1ogi_A_113	1ogi	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 116
1ogi_A_113	1ogi	A	FADFLAVIN-ADENINE DINUCLEOTIDE	C - 117
1ogi_A_113	1ogi	A	FADFLAVIN-ADENINE DINUCLEOTIDE	S - 118
1ogi_A_113	1ogi	A	FADFLAVIN-ADENINE DINUCLEOTIDE	T - 119
1r3s_A_151	1r3s	A	1CPCOPROPORPHYRIN I	F - 154
1r3s_A_151	1r3s	A	1CPCOPROPORPHYRIN I	T - 160
1r3s_A_151	1r3s	A	1CPCOPROPORPHYRIN I	Y - 164
4aig_*_6	4aig	*	CACALCIUM ION	Y - 7
4aig_*_6	4aig	*	CACALCIUM ION	I - 8
4aig_*_6	4aig	*	CACALCIUM ION	E - 9

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1hdi_A_311	1hdi	A	AMPAMP BINDING SITE	G - 312
1hdi_A_311	1hdi	A	AMPAMP BINDING SITE	L - 313
1ogi_A_113	1ogi	A	AC1FAD BINDING SITE FOR CHAIN A	G - 115
1ogi_A_113	1ogi	A	AC1FAD BINDING SITE FOR CHAIN A	C - 117
1ogi_A_113	1ogi	A	AC1FAD BINDING SITE FOR CHAIN A	S - 118

Clusters included in this Subclass

CLUSTER: EH.0.8