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Information on SUBCLASS 1.3.2
Subclass Accession number: 8857
Subclass: 1.3.2 PSSM
Type: HH alpha-alpha
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 54

Average sequence ID (%) : 14.1 +/- 17.5
Average RMSD (Å) : 0.407 +/- 0.161

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 90-135 rho (°): 0-45
Consensus Sequence: XXcXX
(φψ)-conformation: aalaa
Pattern: xxxx[adeknqrs]x[aegknqr]xxxx[acfilmtv]
Conservation:-0.687-0.5130.220-0.8670.439-0.2041.981-0.672-0.722-0.703-0.2191.947
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a76_*_2351a76   -239250YELVRSGVAKDVHHHHHHT-HHHHaaaaaavaaaaa
1am7_A_881am7   A97108QQIKERGALPMIHHHHHTT-HHHHaaaaaavaaaaa
1apm_E_761apm   E7788QKVVKLKQIEHTHHHHHTT-HHHHaaaaaalaaaaa
1apx_A_101apx   A2536GFIAEKKCAPLIHHHHHHT-HHHHaaaaaalaaaaa
1b79_A_831b79   A8899ESLERQGQLDSVHHHHTTTTHHHHaaaaaavaaaaa
1b9b_A_1321b9b   A132143LEEREKGLTFCVHHHHHHT-HHHHaaaaaavaaaaa
1bfd_*_2091bfd   -209220PDVDAANANADCHHHHHHT-HHHHaaaaaalaaaaa
1bu6_O_1091bu6   O113124EHLKRDGLEDYIHHHHHTTTHHHHaaaaaavaaaaa
1c8k_A_951c8k   A97108NTMVNLALENACHHHHHHT-HHHHaaaaaavaaaaa
1d4o_A_311d4o   A3142YGLCAAKAQYPIHHHHHTTTHHHHaaaaaalaaaaa
1dmh_A_521dmh   A6374NQLGANQEAGLLHHHHHTT-HHHHaaaaaalaaaaa
1dqa_A_8331dqa   A854865MAALAAGHLVKSHHHHHHT-HHHHaaaaaavaaaaa
1ehw_A_131ehw   A1324PDGVQRRLVGDVHHHHHTT-HHHHaaaaaalaaaaa
1foh_A_581foh   A6273ESLKNLGLADKIHHHHHTT-HHHHaaaaaavaaaaa
1fot_A_1201fot   A121132EIVVRLKQVEHTHHHHHTT-HHHHaaaaaalaaaaa
1gzg_A_2121gzg   A213224PFRDAVGSASNLHHHHHHT-HHHHaaaaaavaaaaa
1h1w_A_1151h1w   A116127RHIIKENKVPYVHHHHHTT-HHHHaaaaaalaaaaa
1hn0_A_4051hn0   A406417DALKEANLQTQVHHHHHTT-HHHHaaaaaavaaaaa
1hti_A_1311hti   A131142LDEREAGITEKVHHHHHTSTHHHHaaaaaavaaaaa
1htr_P_131htr   P1526ETMKEKGLLGEFHHHHHTT-HHHHaaaaaavaaaaa
1io7_A_2111io7   A223234IDFTRFNLWQRIHHHHHTT-HHHHaaaaaalaaaaa
1io7_A_2311io7   A232243QRIREENLYLKAHHHHHHT-HHHHaaaaaalaaaaa
1j8f_A_3241j8f   A330341ALAELLGWKKELHHHHHTT-HHHHaaaaaavaaaaa
1jqn_A_7341jqn   A739750QKVVEDGKQSELHHHHTTT-HHHHaaaaaavaaaaa
1jr2_A_641jr2   A7283LCLEQNNKTEVWHHHHHTT-HHHHaaaaaavaaaaa
1k44_A_111k44   A1122PDGIERQLIGEIHHHHHTT-HHHHaaaaaalaaaaa
1k4g_A_3401k4g   A362373RDSISEGRFSQFHHHHHTT-HHHHaaaaaavaaaaa
1kv5_A_1311kv5   A131142LQERESGRTAVVHHHHHTT-HHHHaaaaaavaaaaa
1l3s_A_4401l3s   A463474DELRRNEQDRLLHHHHHTT-HHHHaaaaaavaaaaa
1l5r_A_951l5r   A97108NTMINLGLQNACHHHHHTT-HHHHaaaaaavaaaaa
1l5w_A_741l5w   A7687NNLLNLGWYQDVHHHHHHT-HHHHaaaaaavaaaaa
1lyx_A_1311lyx   A131142LEQREQNKTIEVHHHHHTT-HHHHaaaaaavaaaaa
1m6j_A_1381m6j   A138149EAQRIANQTEEVHHHHHTT-HHHHaaaaaalaaaaa
1mo0_A_1301mo0   A130141LEEREAGHTKDVHHHHHTT-HHHHaaaaaavaaaaa
1mq4_A_1661mq4   A167178AQLEKAGVEHQLHHHHHHT-HHHHaaaaaavaaaaa
1n40_A_851n40   A8798GNIADAGLRKAVHHHHHTT-HHHHaaaaaavaaaaa
1n4p_B_2201n4p   B228239ASLCLMGKLEEVHHHHHHT-HHHHaaaaaavaaaaa
1n55_A_1311n55   A131142LQQREANQTAKVHHHHHTT-HHHHaaaaaavaaaaa
1ney_A_1311ney   A131142LEEKKAGKTLDVHHHHHTT-HHHHaaaaaavaaaaa
1nhk_L_121nhk   L1223PDGLEKGVIGKIHHHHHTT-HHHHaaaaaavaaaaa
1npk_*_171npk   -1728PDGVARGLVGEIHHHHHTT-HHHHaaaaaavaaaaa
1nue_A_131nue   A1324PDGVQRGLVGEIHHHHHTT-HHHHaaaaaavaaaaa
1nui_A_2381nui   A239250NECHLNGHDREIHHHHTTTTHHHHaaaaaaUaaaaa
1o94_A_5661o94   A566577NYMHFTLEYPNMHHHHHTT-HHHHaaaaaavaaaaa
1omw_A_2241omw   A225236KRIKMKQGETLAHHHHHHT-HHHHaaaaaalaaaaa
1ovm_A_2181ovm   A218229FLVLRHGLKHALHHHHHTT-HHHHaaaaaalaaaaa
1pa1_A_5021pa1   A508519EQIDKSGSWAAIHHHHHHT-HHHHaaaaaavaaaaa
1pno_A_3161pno   A316327YGMAVAQAQHALHHHHHHT-HHHHaaaaaalaaaaa
1q1a_A_2701q1a   A276287QLVEELGWQEDFHHHHHHT-HHHHaaaaaavaaaaa
1qwg_A_751qwg   A7990EYAYSKGKFDEFHHHHHTT-HHHHaaaaaavaaaaa
1tcd_A_1321tcd   A132143NEEREAGRTAAVHHHHHTT-HHHHaaaaaavaaaaa
1tmh_A_1331tmh   A133144EAENEAGKTEEVHHHHHHTTHHHHaaaaaavaaaaa
1tph_1_1311tph   1131142LDEREAGITEKVHHHHHTT-HHHHaaaaaavaaaaa
2btm_A_1302btm   A130141LEEREAGQTNAVHHHHHTT-HHHHaaaaaalaaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1am7_A_881am7   A     TRNNZ2-TRYPTOPHAN S - 90
1am7_A_881am7   A     TRNNZ2-TRYPTOPHAN Q - 91
1am7_A_881am7   A     TRNNZ2-TRYPTOPHAN V - 94
1am7_A_881am7   A     TRNNZ2-TRYPTOPHAN A - 95
1am7_A_881am7   A     TRNNZ2-TRYPTOPHAN L - 96
1am7_A_881am7   A     TRNNZ2-TRYPTOPHAN Q - 98
1am7_A_881am7   A     TRNNZ2-TRYPTOPHAN I - 99
1apm_E_761apm   E     PHOPHEOPHYTIN A Q - 77
1apm_E_761apm   E     PHOPHEOPHYTIN A H - 87
1apm_E_761apm   E     PHOPHEOPHYTIN A N - 90
1apx_A_101apx   A     HEMPROTOPORPHYRIN IX CONTAINING FE A - 33
1apx_A_101apx   A     HEMPROTOPORPHYRIN IX CONTAINING FE P - 34
1apx_A_101apx   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 35
1apx_A_101apx   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 37
1apx_A_101apx   A     HEMPROTOPORPHYRIN IX CONTAINING FE R - 38
1apx_A_101apx   A     HEMPROTOPORPHYRIN IX CONTAINING FE W - 41
1apx_A_101apx   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 42
1d4o_A_311d4o   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Y - 31
1d4o_A_311d4o   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 32
1d4o_A_311d4o   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 33
1d4o_A_311d4o   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 35
1d4o_A_311d4o   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 36
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE D - 53
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE E - 54
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE Y - 55
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE A - 57
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE G - 58
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE V - 59
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE Y - 61
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE L - 62
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE Q - 64
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE L - 65
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE A - 71
1dmh_A_521dmh   A     MCT4-METHYLCATECHOL G - 72
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE G - 72
1dmh_A_521dmh   A     MCT4-METHYLCATECHOL L - 73
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE L - 74
1dmh_A_521dmh   A     LIO[1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE S - 75
1dmh_A_521dmh   A     MCT4-METHYLCATECHOL P - 76
1dmh_A_521dmh   A     MCT4-METHYLCATECHOL G - 77
1dqa_A_8331dqa   A     COACOENZYME A G - 849
1dqa_A_8331dqa   A     COACOENZYME A S - 852
1dqa_A_8331dqa   A     COACOENZYME A L - 853
1dqa_A_8331dqa   A     MAH3-HYDROXY-3-METHYL-GLUTARIC ACID L - 853
1dqa_A_8331dqa   A     COACOENZYME A A - 856
1dqa_A_8331dqa   A     MAH3-HYDROXY-3-METHYL-GLUTARIC ACID L - 857
1dqa_A_8331dqa   A     COACOENZYME A H - 861
1dqa_A_8331dqa   A     COACOENZYME A L - 862
1dqa_A_8331dqa   A     MAH3-HYDROXY-3-METHYL-GLUTARIC ACID L - 862
1dqa_A_8331dqa   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE L - 862
1dqa_A_8331dqa   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 863
1dqa_A_8331dqa   A     COACOENZYME A S - 865
1dqa_A_8331dqa   A     COACOENZYME A H - 866
1dqa_A_8331dqa   A     MAH3-HYDROXY-3-METHYL-GLUTARIC ACID H - 866
1dqa_A_8331dqa   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE H - 866
1dqa_A_8331dqa   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE M - 867
1dqa_A_8331dqa   A     COACOENZYME A I - 868
1dqa_A_8331dqa   A     COACOENZYME A H - 869
1gzg_A_2121gzg   A     LAF5-FLUOROLEVULINIC ACID G - 212
1gzg_A_2121gzg   A     LAF5-FLUOROLEVULINIC ACID P - 213
1gzg_A_2121gzg   A     LAF5-FLUOROLEVULINIC ACID F - 214
1gzg_A_2121gzg   A     LAF5-FLUOROLEVULINIC ACID R - 215
1gzg_A_2121gzg   A     LAF5-FLUOROLEVULINIC ACID S - 220
1gzg_A_2121gzg   A     LAF5-FLUOROLEVULINIC ACID L - 224
1h1w_A_1151h1w   A     GOLGLYCEROL K - 123
1h1w_A_1151h1w   A     SEPPHOSPHOSERINE Y - 126
1h1w_A_1151h1w   A     GOLGLYCEROL Y - 126
1h1w_A_1151h1w   A     GOLGLYCEROL V - 127
1h1w_A_1151h1w   A     SEPPHOSPHOSERINE R - 129
1h1w_A_1151h1w   A     GOLGLYCEROL E - 130
1h1w_A_1151h1w   A     ATPADENOSINE-5'-TRIPHOSPHATE E - 130
1io7_A_2111io7   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 211
1io7_A_2111io7   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 213
1io7_A_2111io7   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 214
1io7_A_2111io7   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 217
1io7_A_2311io7   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 248
1k4g_A_3401k4g   A     ZNZINC ION H - 349
1k4g_A_3401k4g   A     ZNZINC ION N - 350
1k4g_A_3401k4g   A     ZNZINC ION A - 352
1k4g_A_3401k4g   A     ZNZINC ION F - 353
1k4g_A_3401k4g   A     ZNZINC ION Q - 356
1kv5_A_1311kv5   A     GOLGLYCEROL R - 134
1kv5_A_1311kv5   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE A - 140
1kv5_A_1311kv5   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE V - 141
1kv5_A_1311kv5   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE L - 144
1kv5_A_1311kv5   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE T - 145
1kv5_A_1311kv5   A     DTT2,3-DIHYDROXY-1,4-DITHIOBUTANE A - 148
1kv5_A_1311kv5   A     GOLGLYCEROL A - 151
1mq4_A_1661mq4   A     PO4PHOSPHATE ION H - 176
1mq4_A_1661mq4   A     PO4PHOSPHATE ION Q - 177
1mq4_A_1661mq4   A     PO4PHOSPHATE ION R - 180
1mq4_A_1661mq4   A     MGMAGNESIUM ION E - 181
1mq4_A_1661mq4   A     ADPADENOSINE-5'-DIPHOSPHATE E - 181
1n40_A_851n40   A     HEMPROTOPORPHYRIN IX CONTAINING FE N - 85
1n40_A_851n40   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 86
1n40_A_851n40   A     HEMPROTOPORPHYRIN IX CONTAINING FE G - 87
1n4p_B_2201n4p   B     GRGGERANYLGERANYL DIPHOSPHATE G - 220
1n4p_B_2201n4p   B     GRGGERANYLGERANYL DIPHOSPHATE G - 221
1n4p_B_2201n4p   B     GRGGERANYLGERANYL DIPHOSPHATE S - 222
1n4p_B_2201n4p   B     GRGGERANYLGERANYL DIPHOSPHATE F - 224
1n4p_B_2201n4p   B     GRGGERANYLGERANYL DIPHOSPHATE C - 225
1ney_A_1311ney   A     FTRFLUOROTRYPTOPHANE L - 131
1ney_A_1311ney   A     FTRFLUOROTRYPTOPHANE E - 132
1ney_A_1311ney   A     FTRFLUOROTRYPTOPHANE E - 133
1ney_A_1311ney   A     FTRFLUOROTRYPTOPHANE K - 134
1ney_A_1311ney   A     FTRFLUOROTRYPTOPHANE T - 139
1nui_A_2381nui   A     MGMAGNESIUM ION N - 239
1nui_A_2381nui   A     MGMAGNESIUM ION E - 240
1pno_A_3161pno   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Y - 316
1pno_A_3161pno   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 317
1pno_A_3161pno   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE M - 318
1pno_A_3161pno   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 320
1pno_A_3161pno   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 321
1q1a_A_2701q1a   A     OAD2'-O-ACETYL ADENOSINE-5-DIPHOSPHORIBOSE S - 270
1q1a_A_2701q1a   A     OAD2'-O-ACETYL ADENOSINE-5-DIPHOSPHORIBOSE D - 271
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1gzg_A_2121gzg   A LA2LAF BINDING SITE FOR CHAIN AF - 214
1h1w_A_1151h1w   A PIFPIF-POCKET (BIONDI ET AL., 2000)K - 115
1h1w_A_1151h1w   A PIFPIF-POCKET (BIONDI ET AL., 2000)I - 118
1h1w_A_1151h1w   A PIFPIF-POCKET (BIONDI ET AL., 2000)I - 119
1h1w_A_1151h1w   A PIFPIF-POCKET (BIONDI ET AL., 2000)V - 124
1h1w_A_1151h1w   A PIFPIF-POCKET (BIONDI ET AL., 2000)V - 127
1h1w_A_1151h1w   A AC1SEP BINDING SITE FOR CHAIN AR - 129
1h1w_A_1151h1w   A AC8GOL BINDING SITE FOR CHAIN AE - 130
1h1w_A_1151h1w   A PPBPHOSPHOPEPTIDE BINDING SITER - 131
1h1w_A_1151h1w   A BC5SO4 BINDING SITE FOR CHAIN AR - 136

Clusters included in this Subclass
CLUSTER: HH.1.37
CLUSTER: HH.2.158
CLUSTER: HH.2.6
CLUSTER: HH.3.3
CLUSTER: HH.4.3