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Information on SUBCLASS 2.4.2
Subclass Accession number: 6129
Subclass: 2.4.2 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 78

Average sequence ID (%) : 9.0 +/- 11.8
Average RMSD (Å) : 0.395 +/- 0.191

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 315-360
Consensus Sequence: XXXcXX
(φψ)-conformation: abplbb
Pattern: xxxx[adgknqrst]xxxxx
Conservation:-0.520-0.627-0.1360.3232.322-0.367-0.806-0.188-1.000-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a1x_*_131a1x   -1624VHQEGIYRD.EEETTEEEE.xabpvbbbx.
1a2z_A_1791a2z   A179185FFLLGKN...EEETTEE...babpvbx...
1af7_*_2731af7   -275283LRGQTVYAL.EEETTEEEE.xabplbbbx.
1aih_A_2191aih   A219227.VMPYKITFT.EETTEEEEE.xbpvbbbbb
1aop_*_4911aop   -495504GKAPGRYNLHEEETTEEEEEpabpvbbxbb
1aun_*_1391aun   -139144.RVPGGC....EETTEE....xbpvbb...
1dci_A_571dci   A6170SAQKHVLHVQEEETTEEEEExabpvbbbbb
1deu_A_1101deu   A112120CNEFKECHA.EEETTEEEE.babpvbbbx.
1dl5_A_1841dl5   A189198KKKDPYLVGNEEETTEEEEEbxbpwbbbbb
1dqs_A_3681dqs   A368374LSAIGTP...EEETTEE...xabxvbx...
1dqt_A_661dqt   A6978TFNESRVNLTEEETTEEEEEbbbpvbbxxb
1e0s_A_391e0s   A4251IPTVGFNVETEEETTEEEEEbwbpvbbbbb
1ekm_A_4441ekm   A446454RVYPNVNAH.EEETTEEEE.xabpvbbxx.
1erj_A_3581erj   A361370TGCNKTTQVYEE-BS-EEEEbbbxgbbbbb
1f3u_A_411f3u   A4655AKTQGRTEVSEEETTEEEEEbbbxlbbbbb
1f42_A_21f42   A312ELKKDVYVVEEEETTEEEEExabpvbbbbx
1f83_A_331f83   A3744KITDRIWI..EEETTEEE..xabpvbbb..
1ffv_C_1531ffv   C153159FLGTYMT...EEETTEE...xabxvbb...
1fx3_A_511fx3   A5766QVGDDLYEVVEEETTEEEEExabxvbbbbb
1g2n_A_3221g2n   A324332CLMPGMTLH.EEETTEEEE.xabpvbbbx.
1gg4_A_3181gg4   A321330QLAENQLLLDEEETTEEEEExabxUbbbbx
1gmu_A_1001gmu   A100109QIMPGELRYHEEETTEEEEEbbbxvbbbbp
1gw0_A_121gw0   A1218CWSDGFD...EEETTEE...xabpvbb...
1h5q_A_1571h5q   A157163QSSLNGS...EEETTEE...babplbx...
1hhs_A_381hhs   A3844ETYEGLL...EEETTEE...xabpvbx...
1hp1_A_2591hp1   A259265MAAENKK...EEETTEE...xabplbx...
1hyo_A_3891hyo   A396405CQGDGYRVGFEE-SS-EEEExbxxvbbxba
1i2h_A_10671i2h   A10691078KTSQKFGQWAEEETTEEEEExabpUbbbbx
1i2m_A_391i2m   A4049VATLGVEVHPEEETTEEEEExabpUbxbbw
1i7q_A_931i7q   A95104QARPNGRELTEEETTEEEEEbxbxlbbbbb
1ihk_A_951ihk   A99108SIAVGLVSIREEETTEEEEExabpvbbbbb
1ijt_A_1161ijt   A120129PVERGVVSIFEEETTEEEEEwabpvbbbbb
1ivw_A_4191ivw   A421429QLAPGLGAP.EEETTEEEE.xabpvxbbx.
1j75_A_1581j75   A160168SPEPATWSI.EEETTEEEE.babxlbbbx.
1jdw_*_3081jdw   -310318IIGPGIVLS.EEETTEEEE.xabxvbbxb.
1jje_A_81jje   A1120KLDEGVYVHTEEETTEEEEExabpvbbbbb
1jk4_A_651jk4   A6774CAAAGICC..EEETTEEE..xabxvbbb..
1jlx_A_2461jlx   A250259VHDFNVISLLEEETTEEEEExabpvbbbbx
1k32_A_2121k32   A216225EVNSGAFKKIEEETTEEEEExabpvbbbxa
1k75_A_1071k75   A110119ETQPGVRCQQEEETTEEEEExabpvbxbbb
1ksi_A_4301ksi   A432440LVSANSIGI.EEETTEEEE.xabpvbbxx.
1li4_A_3171li4   A320329NIKPQVDRYREEETTEEEEExabpvbbbxb
1lvl_*_1181lvl   -120128VLDGKQVEV.EEETTEEEE.xabxNbbbb.
1m3q_A_481m3q   A4958EQSPAHWSGVEEETTEEEEExabpvbbbex
1mkp_*_2081mkp   -209217EILPFLYLG.EEETTEEEE.xabpvbbbb.
1mzv_A_31mzv   A513EIGPNSLLL.EEETTEEEE.xabplbbbx.
1n62_C_1521n62   C153159YQGAYFT...EEETTEE...babxvbb...
1n67_A_4631n67   A466475FPNPNQYKVEEEETTEEEEEbabplbbbbx
1nlf_A_221nlf   A2228YVLPNMV...EEETTEE...babpvbx...
1nrz_A_1151nrz   A116123QLTKAVSL..EEETTEEE..xabpvbbb..
1nsj_*_1841nsj   -184190EAFPGKK...EEETTEE...babpvbx...
1oac_A_5121oac   A514522LIDHNIVGT.EEETTEEEE.xabxvbbxp.
1oej_A_911oej   A94103FHRNNETTSCEEETTEEEEEbbbpvbbbbb
1ofz_A_1681ofz   A172181AIGPGRLRIYEEETTEEEEExabpvbbbbb
1omz_A_1801omz   A185194STSSGIYSYGEEETTEEEEEbabpvbbbxb
1osp_O_1561osp   O160169EVLKGYVLEGEE-SS-EEEEbxbxgbbbbb
1p32_A_1171p32   A122131RKVAGEKITVEEETTEEEEEbbbpvbbbbb
1p9l_A_1921p9l   A198207FGTEGETLTIEEETTEEEEEbbbpvbbbbb
1pii_*_4311pii   -431437ESQPGIK...EEETTEE...babpvbx...
1pyo_A_1131pyo   A113119.GVEGAIY...EETTEEE...bbpvbbx..
1q16_A_3391q16   A343352EERDGYYAAGEE-SSSEEEExxbxvbbbxb
1q1u_A_441q1u   A4857PVGLRVVAIQEEETTEEEEExabxlbbbbb
1qb7_A_31qb7   A513EVSPNSFLL.EEETTEEEE.xabplbbbx.
1qql_A_441qql   A4857TVAVGIVAIKEEETTEEEEExabpvbbbbb
1qtn_A_3181qtn   A318324.GDKGIIY...EETTEEE...bbpvbbx..
1qwy_A_2421qwy   A247256IKEANSNNYQEEETTSSEEEbxxplbabbb
1rhf_A_471rhf   A5261PVSEQHWIGFEEETTEEEEExabxvbbbxb
1rwh_A_3841rwh   A387396HRGPGWALSLEEETTEEEEEbbbpvbbxbx
1sat_*_1221sat   -122128QDRPGHY...EEETTEE...babpvbx...
1smr_A_2381smr   A239248EKRLHEYVVSEEETTEEEEExabpvbbbbx
1v5x_A_1781v5x   A178184EEAPGVK...EEETTEE...babxgbx...
1vhr_A_301vhr   A3240EVTPRIYVG.EEETTEEEE.xabpvbbbb.
1vjl_A_181vjl   A2231LGIEGTNRVLEEETTSSEEExxbpvbabbb
1vrt_A_3261vrt   A331340KQGQGQWTYQEEETTEEEEExabxvbbbbb
2cua_A_1142cua   A116125FHVEGTNINVEEETTSS-EEbbxxvbaxbb
2hip_A_372hip   A4048AVQDGWGRC.EEETTEEEE.xabpvbbxb.
2shp_A_632shp   A6371YDLYGGEKF.EEETTS-EE.xbxxvbxxb.
3psg_*_2743psg   -276284LQDDDSCTS.EE-SS-EEE.xbbbvbbbx.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1dl5_A_1841dl5   A     CDCADMIUM ION Y - 194
1f42_A_21f42   A     NAGN-ACETYL-D-GLUCOSAMINE W - 2
1f42_A_21f42   A     MANALPHA-D-MANNOSE W - 2
1f42_A_21f42   A     NAGN-ACETYL-D-GLUCOSAMINE E - 3
1f42_A_21f42   A     MANALPHA-D-MANNOSE E - 3
1f42_A_21f42   A     NAGN-ACETYL-D-GLUCOSAMINE L - 4
1f42_A_21f42   A     NAGN-ACETYL-D-GLUCOSAMINE V - 10
1f42_A_21f42   A     NAGN-ACETYL-D-GLUCOSAMINE E - 12
1g2n_A_3221g2n   A     EPHL-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE M - 323
1g2n_A_3221g2n   A     EPHL-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE L - 325
1g2n_A_3221g2n   A     EPHL-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE L - 331
1gg4_A_3181gg4   A     MSESELENOMETHIONINE L - 327
1gg4_A_3181gg4   A     MSESELENOMETHIONINE L - 329
1gg4_A_3181gg4   A     MSESELENOMETHIONINE D - 330
1jje_A_81jje   A     ZNZINC ION K - 8
1jje_A_81jje   A     ACTACETATE ION K - 8
1jje_A_81jje   A     ZNZINC ION E - 10
1jje_A_81jje   A     ACTACETATE ION E - 10
1jje_A_81jje   A     ZNZINC ION V - 18
1jje_A_81jje   A     ZNZINC ION T - 20
1jje_A_81jje   A     ACTACETATE ION T - 20
1jje_A_81jje   A     ACTACETATE ION F - 22
1k75_A_1071k75   A     MSESELENOMETHIONINE Q - 118
1k75_A_1071k75   A     MSESELENOMETHIONINE Q - 119
1lvl_*_1181lvl   *     FADFLAVIN-ADENINE DINUCLEOTIDE A - 118
1lvl_*_1181lvl   *     FADFLAVIN-ADENINE DINUCLEOTIDE K - 119
1n62_C_1521n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 152
1ofz_A_1681ofz   A     AFLALPHA-L-FUCOSE I - 173
1ofz_A_1681ofz   A     FULBETA-L-FUCOSE G - 176
1ofz_A_1681ofz   A     FULBETA-L-FUCOSE R - 177
1ofz_A_1681ofz   A     AFLALPHA-L-FUCOSE R - 177
1ofz_A_1681ofz   A     FULBETA-L-FUCOSE L - 178
1ofz_A_1681ofz   A     AFLALPHA-L-FUCOSE R - 179
1ofz_A_1681ofz   A     AFLALPHA-L-FUCOSE Y - 181
1omz_A_1801omz   A     UD2URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE Y - 193
1p9l_A_1921p9l   A     PDCPYRIDINE-2,6-DICARBOXYLIC ACID A - 192
1p9l_A_1921p9l   A     PG4TETRAETHYLENE GLYCOL E - 195
1p9l_A_1921p9l   A     PG4TETRAETHYLENE GLYCOL L - 197
1p9l_A_1921p9l   A     PG4TETRAETHYLENE GLYCOL T - 204
1p9l_A_1921p9l   A     PG4TETRAETHYLENE GLYCOL T - 206
1qtn_A_3181qtn   A     ASAASPARTIC ALDEHYDE G - 318
1qwy_A_2421qwy   A     ZNZINC ION H - 260
1rhf_A_471rhf   A     MSESELENOMETHIONINE E - 55
1rhf_A_471rhf   A     MSESELENOMETHIONINE Q - 56
1rhf_A_471rhf   A     MSESELENOMETHIONINE H - 57
1rhf_A_471rhf   A     MSESELENOMETHIONINE W - 58
2cua_A_1142cua   A     CUADINUCLEAR COPPER ION H - 114
2cua_A_1142cua   A     CUADINUCLEAR COPPER ION G - 115
2cua_A_1142cua   A     ZNZINC ION H - 117
2cua_A_1142cua   A     ZNZINC ION V - 118
2cua_A_1142cua   A     ZNZINC ION E - 119
2cua_A_1142cua   A     ZNZINC ION G - 120
2cua_A_1142cua   A     ZNZINC ION T - 121
2hip_A_372hip   A     FS4IRON/SULFUR CLUSTER W - 37
2hip_A_372hip   A     FS4IRON/SULFUR CLUSTER R - 47
2hip_A_372hip   A     FS4IRON/SULFUR CLUSTER C - 48
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ofz_A_1681ofz   A AC4AFL BINDING SITE FOR CHAIN AR - 179

Clusters included in this Subclass
CLUSTER: HA.2.15
CLUSTER: HA.3.9
CLUSTER: HA.4.160
CLUSTER: HA.5.187