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PDB code:

Information on SUBCLASS 4.1.1

Subclass Accession number: 5587 Subclass: 4.1.1 Type: HE alpha-beta DB: ArchDB95 Image coordinates: Consensus coordinates:

Number of loops: 61 Average sequence ID (%) : 16.9 +/- 16.7 Average RMSD (Å) : 0.611 +/- 0.210 Consensus geometry d (Å): 11 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1b16_A_42	1b16	A	45	58	LAELKAINPKVNIT	HHHHHHH-TTSEEE	aaaaaaabaaxxbb
1bfd_*_406	1bfd	-	410	423	AIGVQLAEPERQVI	HHHHHHH-TTS-EE	aaaaaaabaabxxb
1bpy_A_152	1bpy	A	163	176	LNEVKKVDSEYIAT	HHHHHHH-TT-EEE	aaaaaaabaaxbbb
1bwv_S_80	1bwv	S	87	100	INACRKARSNFYIK	HHHHHHH-TTSEEE	aaaaaaabaabxbb
1cex_*_92	1cex	-	102	115	FQQANTKCPDATLI	HHHHHHH-TT-EEE	aaaaaaabaaxxxb
1chm_A_130	1chm	A	133	146	RDKLAARYPDAELV	HHHHHHH-TT-EEE	aaaaaaabaabxbb
1cl1_A_166	1cl1	A	170	183	VAAVRSVVPDAIIM	HHHHHHH-TT-EEE	aaaaaaabaaxbbb
1d3v_A_104	1d3v	A	108	121	ISGHARVHPDLCVI	HHHHHHH-TT-EEE	aaaaaaabaaxbbb
1dqn_A_132	1dqn	A	134	147	IFSIQEQIKHAKIC	HHHHHHHSTT-EEE	aaaaaaabaaxbbb
1eg5_A_158	1eg5	A	162	175	TRIVKKKNKETLVH	HHHHHHH-TT-EEE	aaaaaaabaaxxbb
1es9_A_110	1es9	A	121	134	VQLVNERQPQARVV	HHHHHHHSTT-EEE	aaaaaaabaaxxbb
1eu8_A_15	1eu8	A	25	38	IAEFEKKYPGVTVE	HHHHHHHSTT-EEE	aaaaaaabaabbbx
1fxw_F_111	1fxw	F	122	135	VQLINTRQPQAKII	HHHHHHH-TT-EEE	aaaaaaabaaxxbb
1fye_A_171	1fye	A	175	188	IRELLVVAPELTVI	HHHHHHH-TT-EEE	aaaaaaabaaxbbb
1g2o_A_162	1g2o	A	165	178	RELARQSDPQLAEG	HHHHHHH-TT-EEE	aaaaaaabaapxbb
1g66_A_57	1g66	A	72	85	VNSFNSQCPSTKIV	HHHHHHHSTT-EEE	aaaaaaabaaxxbb
1gns_A_64	1gns	A	69	82	AGTVLAVAPSASLY	HHHHHHHSTT-EEE	aaaaaaabaaxxxb
1gt9_1_76	1gt9	1	83	96	IEVAGALAPGAKIA	HHHHHHHSTTSEEE	aaaaaaabaaxxbb
1gtk_A_14	1gtk	A	24	37	KDKLMASHPGLVVE	HHHHHHH-TT-EEE	aaaaaaabaaxbbb
1hwl_A_657	1hwl	A	668	681	LSKLHEYFPEMQIL	HHHHHHH-TT-EEE	aaaaaaabaaxbxa
1i0z_A_110	1i0z	A	121	134	IPQIVKYSPDCIII	HHHHHHH-TT-EEE	aaaaaaabaaxbbb
1iug_A_140	1iug	A	144	157	ARAFKEKNPEGLVG	HHHHHHH-TT-EEE	aaaaaaabaaxbbb
1j0h_A_335	1j0h	A	342	355	RQEVKALKPDVYIL	HHHHHHH-TT-EEE	aaaaaaabaaxxbb
1j20_A_121	1j20	A	126	139	ELTAYALKPDIKVI	HHHHHHHSTT-EEE	aaaaaaabaaxbbb
1ji1_A_371	1ji1	A	381	394	RNAVKGVNSNAAII	HHHHHHH-TT-EEE	aaaaaaabaaxxbb
1ji2_A_332	1ji2	A	339	352	RRLVKSLNPDALIV	HHHHHHH-TT-EEE	aaaaaaabaaxxbb
1jih_A_77	1jih	A	77	90	IQEALKKCSNLIPI	HHHHHHH-TT-EEE	aaaaaaabaaxbwb
1jms_A_305	1jms	A	316	329	KEAVVTFLPDALVT	HHHHHHH-TT-EEE	aaaaaaabaaxbbb
1jn3_A_152	1jn3	A	163	176	LNEVKKLDPEYIAT	HHHHHHH-TT-EEE	aaaaaaabaaxbbb
1jx4_A_61	1jx4	A	61	74	IVEAKKILPNAVYL	HHHHHHH-TTSEEE	aaaaaaabaaxxbb
1jz7_A_466	1jz7	A	472	485	YRWIKSVDPSRPVQ	HHHHHHH-TTS-EE	aaaaaaabaabxbb
1lhp_A_88	1lhp	A	98	111	VQELKQQNPRLVYV	HHHHHHH-TT-EEE	aaaaaaabaaxbbx
1lw6_I_32	1lw6	I	36	49	KKVILQDKPAAQII	HHHHHHH-TT-EEE	aaaaaaabaapbxb
1m6i_A_141	1m6i	A	147	160	ARSIRARDPGARVL	HHHHHHHSTT-EEE	aaaaaaabaapbbb
1mld_A_90	1mld	A	101	114	TAACAQHCPDAMIC	HHHHHHH-TTSEEE	aaaaaaabaaxxbb
1nat_*_62	1nat	-	66	79	LKRMKVIDENIRVI	HHHHHHH-TT-EEE	aaaaaaabaapbbb
1nij_A_167	1nij	A	170	183	HERLARINARAPVY	HHHHHHH-SSS-EE	aaaaaaabaaxxbb
1nst_A_686	1nst	A	687	700	PRRAAALLPKAKVL	HHHHHHH-TT-EEE	aaaaaaabaapxbb
1nvm_B_81	1nvm	B	88	101	EALLRQAKPGIRLI	HHHHHHH-TT-EEE	aaaaaaabaaxxbb
1o5o_A_164	1o5o	A	167	180	VEAVEKKYEDVKIY	HHHHHHH-TT-EEE	aaaaaaabaaxxbb
1o5o_A_81	1o5o	A	85	97	ADGILELLPNASV.	HHHHHHHSTT-EE.	aaaaaaabaaxxb.
1o5z_A_372	1o5z	A	376	388	VDMAKKFFKNVEV.	HHHHHHH-S--EE.	aaaaaaabaapbb.
1oaa_*_45	1oaa	-	52	65	KEELGAQQPDLKVV	HHHHHHH-TTSEEE	aaaaaaabaabxbb
1obb_A_126	1obb	A	136	149	ARKIEKLSPKAWYL	HHHHHHH-TT-EEE	aaaaaaabaaxxbb
1oc4_A_117	1oc4	A	124	137	GGHIKNNCPNAFII	HHHHHHH-TT-EEE	aaaaaaabaaxxbb
1p5h_A_109	1p5h	A	109	122	WEYIQELNPRVILA	HHHHHHH-TT-EEE	aaaaaaabaaxbbb
1pq4_A_113	1pq4	A	113	126	LEKLKAANANMKLI	HHHHHHH-SSSEEE	aaaaaaabaaxxxx
1pze_A_112	1pze	A	124	137	GQNIKKYCPKTFII	HHHHHHH-TT-EEE	aaaaaaabaaxbxb
1qjc_A_96	1qjc	A	103	116	AHMNRHLMPELESV	HHHHHHH-TTSEEE	aaaaaaabaabxxb
1qoz_A_57	1qoz	A	72	85	INNFHNSCPDTQLV	HHHHHHH-TTSEEE	aaaaaaabaaxxbb
1t2d_A_98	1t2d	A	109	122	GGHIKKNCPNAFII	HHHHHHH-TTSEEE	aaaaaaabaaxxbb
1tml_*_127	1tml	-	141	154	GKALKAGSSQARIY	HHHHHHH-TT-EEE	aaaaaaabaaxbbb
1tyf_A_37	1tyf	A	47	60	MLFLEAENPEKDIY	HHHHHHH-SSS-EE	aaaaaaabaaxpbb
1ufa_A_318	1ufa	A	336	349	LERLAGRHPEGVIL	HHHHHHH-TT-EEE	aaaaaaabaaxbxx
1vi9_A_87	1vi9	A	97	110	VRQVKAANPQAKYF	HHHHHHH-TT-EEE	aaaaaaabaaxbbb
1ypc_I_32	1ypc	I	36	49	KKVILQDKPEAQII	HHHHHHH-TT-EEE	aaaaaaabaaxxbb
2cmd_*_91	2cmd	-	102	115	VQQVAKTCPKACIG	HHHHHHH-TTSEEE	aaaaaaabaaxxbb
3rub_S_80	3rub	S	87	100	VEEAKKAYPQAWIR	HHHHHHH-TTSEEE	aaaaaaabaaxxbb
3thi_A_22	3thi	A	30	43	LDQWQRQEPGVKLE	HHHHHHH-TTSEEE	aaaaaaabaabxbb
8ruc_I_80	8ruc	I	87	100	LEECKKEYPNAFIR	HHHHHHH-TTSEEE	aaaaaaabaabxbb
9ldt_A_113	9ldt	A	124	137	IPNIVKYSPNCKLL	HHHHHHH-TT-EEE	aaaaaaabaaxbxb

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1bfd_*_406	1bfd	*	TPPTHIAMINE DIPHOSPHATE	I - 426
1bfd_*_406	1bfd	*	CACALCIUM ION	G - 427
1bfd_*_406	1bfd	*	TPPTHIAMINE DIPHOSPHATE	G - 427
1cl1_A_166	1cl1	A	LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)	D - 185
1d3v_A_104	1d3v	A	MNMANGANESE (II) ION	W - 122
1d3v_A_104	1d3v	A	ABH2(S)-AMINO-6-BORONOHEXANOIC ACID	W - 122
1d3v_A_104	1d3v	A	MNMANGANESE (II) ION	V - 123
1dqn_A_132	1dqn	A	IMUPHOSPHORIC ACID MONO-[5-(2-AMINO-4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-3,4-DIHYDROXY-PYRROLIDIN -2-YLMETHYL] ESTER	H - 132
1dqn_A_132	1dqn	A	IMUPHOSPHORIC ACID MONO-[5-(2-AMINO-4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-3,4-DIHYDROXY-PYRROLIDIN -2-YLMETHYL] ESTER	T - 133
1dqn_A_132	1dqn	A	POPPYROPHOSPHATE 2-	T - 133
1dqn_A_132	1dqn	A	IMUPHOSPHORIC ACID MONO-[5-(2-AMINO-4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)-3,4-DIHYDROXY-PYRROLIDIN -2-YLMETHYL] ESTER	I - 134
1eg5_A_158	1eg5	A	MSESELENOMETHIONINE	V - 158
1eg5_A_158	1eg5	A	MSESELENOMETHIONINE	H - 175
1eg5_A_158	1eg5	A	MSESELENOMETHIONINE	V - 176
1eg5_A_158	1eg5	A	MSESELENOMETHIONINE	D - 177
1eg5_A_158	1eg5	A	PLPPYRIDOXAL-5'-PHOSPHATE	D - 177
1eu8_A_15	1eu8	A	TRETREHALOSE	E - 17
1g2o_A_162	1g2o	A	PO4PHOSPHATE ION	Y - 180
1g2o_A_162	1g2o	A	IMH1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL	Y - 180
1g66_A_57	1g66	A	GOLGLYCEROL	Y - 57
1g66_A_57	1g66	A	GOLGLYCEROL	S - 70
1g66_A_57	1g66	A	GOLGLYCEROL	N - 73
1g66_A_57	1g66	A	GOLGLYCEROL	S - 74
1g66_A_57	1g66	A	GOLGLYCEROL	F - 75
1g66_A_57	1g66	A	GOLGLYCEROL	S - 77
1g66_A_57	1g66	A	GOLGLYCEROL	Q - 78
1gns_A_64	1gns	A	CSOS-HYDROXYCYSTEINE	H - 64
1gns_A_64	1gns	A	CSOS-HYDROXYCYSTEINE	V - 68
1gtk_A_14	1gtk	A	DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID	L - 15
1gtk_A_14	1gtk	A	DPM3-{2-[4-(2-CARBOXY-ETHYL)-3-CARBOXYMETHYL-5H-PYRROL-2-YLMETHYL]-4-CARBOXYMETHYL-5-METHYL-2H-PYRROL-3-YL}-PROPIONIC ACID	Q - 19
1hwl_A_657	1hwl	A	FBI7-[4-(4-FLUORO-PHENYL)-6-ISOPROPYL-2-(METHANESULFONYL-METHYL-AMINO)-PYRIMIDIN-5-YL] -3,5-DIHYDROXY-HEPTANOIC ACID	M - 657
1hwl_A_657	1hwl	A	FBI7-[4-(4-FLUORO-PHENYL)-6-ISOPROPYL-2-(METHANESULFONYL-METHYL-AMINO)-PYRIMIDIN-5-YL] -3,5-DIHYDROXY-HEPTANOIC ACID	S - 661
1i0z_A_110	1i0z	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	N - 113
1i0z_A_110	1i0z	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	V - 116
1i0z_A_110	1i0z	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	I - 120
1i0z_A_110	1i0z	A	NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE	V - 135
1iug_A_140	1iug	A	LLP2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)	D - 159
1j20_A_121	1j20	A	AMPADENOSINE MONOPHOSPHATE	D - 121
1j20_A_121	1j20	A	AS1ARGININOSUCCINATE	D - 121
1j20_A_121	1j20	A	AS1ARGININOSUCCINATE	Q - 122
1j20_A_121	1j20	A	AS1ARGININOSUCCINATE	R - 124
1j20_A_121	1j20	A	AMPADENOSINE MONOPHOSPHATE	F - 125
1jx4_A_61	1jx4	A	MSESELENOMETHIONINE	L - 74
1jx4_A_61	1jx4	A	CACALCIUM ION	L - 74
1jz7_A_466	1jz7	A	DMSDIMETHYL SULFOXIDE	A - 466
1jz7_A_466	1jz7	A	DMSDIMETHYL SULFOXIDE	P - 480
1jz7_A_466	1jz7	A	DMSDIMETHYL SULFOXIDE	S - 481
1jz7_A_466	1jz7	A	DMSDIMETHYL SULFOXIDE	R - 482
1m6i_A_141	1m6i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	T - 141
1m6i_A_141	1m6i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	A - 142
1m6i_A_141	1m6i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	A - 143
1m6i_A_141	1m6i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	V - 162
1m6i_A_141	1m6i	A	FADFLAVIN-ADENINE DINUCLEOTIDE	S - 163
1nvm_B_81	1nvm	B	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 81
1nvm_B_81	1nvm	B	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	A - 83
1nvm_B_81	1nvm	B	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	N - 87
1nvm_B_81	1nvm	B	MPD2-METHYL-2,4-PENTANEDIOL	A - 89
1nvm_B_81	1nvm	B	MPD2-METHYL-2,4-PENTANEDIOL	L - 90
1nvm_B_81	1nvm	B	MPD2-METHYL-2,4-PENTANEDIOL	L - 91
1nvm_B_81	1nvm	B	MPD2-METHYL-2,4-PENTANEDIOL	Q - 93
1nvm_B_81	1nvm	B	MPD2-METHYL-2,4-PENTANEDIOL	A - 94
1oaa_*_45	1oaa	*	NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE	M - 47
1obb_A_126	1obb	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	Q - 128
1obb_A_126	1obb	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	Y - 131
1obb_A_126	1obb	A	CSWCYSTEINE-S-DIOXIDE	Q - 150
1oc4_A_117	1oc4	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 119
1oc4_A_117	1oc4	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	E - 122
1oc4_A_117	1oc4	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 123
1oc4_A_117	1oc4	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 138
1qoz_A_57	1qoz	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 63
1qoz_A_57	1qoz	A	NAGN-ACETYL-D-GLUCOSAMINE	G - 64
1qoz_A_57	1qoz	A	NAGN-ACETYL-D-GLUCOSAMINE	N - 66
1qoz_A_57	1qoz	A	NAGN-ACETYL-D-GLUCOSAMINE	A - 67
1qoz_A_57	1qoz	A	PCAPYROGLUTAMIC ACID	C - 79
1t2d_A_98	1t2d	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	N - 101
1t2d_A_98	1t2d	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 104
1t2d_A_98	1t2d	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	E - 107
1t2d_A_98	1t2d	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	I - 108
1t2d_A_98	1t2d	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	V - 123
1ufa_A_318	1ufa	A	MSESELENOMETHIONINE	H - 343
1ufa_A_318	1ufa	A	MSESELENOMETHIONINE	P - 344
1ufa_A_318	1ufa	A	MSESELENOMETHIONINE	E - 345
1ufa_A_318	1ufa	A	MSESELENOMETHIONINE	G - 346
1ufa_A_318	1ufa	A	MSESELENOMETHIONINE	L - 349
1ufa_A_318	1ufa	A	MSESELENOMETHIONINE	P - 351
1vi9_A_87	1vi9	A	MSESELENOMETHIONINE	Q - 89
9ldt_A_113	9ldt	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	N - 116
9ldt_A_113	9ldt	A	NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE	F - 122

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1gtk_A_14	1gtk	A	AC1DPM BINDING SITE FOR CHAIN A	L - 15
1obb_A_126	1obb	A	AC1NAD BINDING SITE FOR CHAIN A	Y - 131

Clusters included in this Subclass

CLUSTER: HE.3.11

CLUSTER: HE.4.7

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