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Information on SUBCLASS 3.2.1
Subclass Accession number: 3766
Subclass: 3.2.1 PSSM
Type: AR beta-beta link
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 66

Average sequence ID (%) : 7.5 +/- 11.1
Average RMSD (Å) : 0.509 +/- 0.211

Consensus geometry
d (Å): 13 delta (°): 0-45 theta (°): 45-90 rho (°): 90-135
Consensus Sequence: hXXpXXX
(φψ)-conformation: bbaaabb
Pattern: xx[acfilmpvy]xx[dehknpqrst]x[acfiklmtv]xxxx
Conservation:-1.000-0.6571.749-0.565-1.1581.409-0.1760.464-0.695-0.369-1.000-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a5z_*_2001a5z   -200208.VPVWSGAMI...EE-GGG-EE...bxxaaaxbb..
1a8i_*_1911a8i   -191201.KARPEFTLPVH.EE-GGG-EEEE.bxbaaaxbxbb
1amf_*_1801amf   -184195ATFPEDSHKKVEEE--GGGS--EEbbxxaaabppxb
1b8p_A_1951b8p   A195203.YADYRYAQI...EEE-SS-EE...bxbaaapbb..
1b9m_A_1771b9m   A180190ILLKAPWVGIT.EEE-GGG-EEE.bbbxaaabxbb.
1b9m_A_2461b9m   A249259AYFNADSVIIA.EEE-GGG-EEE.xbbxaaaxbxb.
1bjt_*_9661bjt   -968977SPISLMNMVA..EEE-TTEEEE..bxbbaaaxbb..
1cwv_A_7811cwv   A781791.LILSTLQKKIS.EE-GGG-EEEE.bbxaaapbxbb
1d4x_A_1691d4x   A169178.YALPHAILRL..EE-GGG-EEE..bxbaaaxbbb.
1dpt_A_951dpt   A100109FPLESWQIGK..EEE-GGG-EE..bxbbaaabxb..
1ez4_A_1981ez4   A198206.FAAYSTATI...EE-GGG-EE...bxxaaaxbb..
1f0l_A_4411f0l   A441452LDVNKSKTHISVEEE-TTT-EEEEbbxxaaaxbbbb
1fjr_A_111fjr   A1118..VDISAAQK....EE-TTSEE....bxaaaxxx..
1fp5_A_4831fp5   A483492VQLPDARHST..EE--GGGEEE..bxxxaaabbb..
1g0x_A_1431g0x   A145153LNSQPHARG...EE--GGGEE...bxxxaaabb...
1g29_1_3501g29   1353364VVFDMKKIHIFDEEE-GGG-EEEEbbbxaaaxbbbx
1g41_A_2961g41   A296307GMVKTDHILFIAEEEE-TT-EEEEexbxaaaxxbbb
1gd0_A_941gd0   A99108YDMNAANVGW..EE--GGG-EE..bxxxaaabxb..
1gpi_A_311gpi   A3243VVLDSNWRWVHSEEE-GGGS-EEEbbxxaaaxpbbp
1gv1_A_1781gv1   A178187MVPVVKYTTV..EEE-GGG-EE..xbxxaaabbb..
1gv9_A_511gv9   A5261RRFEYKYSFK..EEE-GGG-EE..bbxbaaabbb..
1h6f_A_2491h6f   A250261TYLFPETEFIAVEEE-GGG-EEEEbbbbaaaxbbxb
1h9m_A_1261h9m   A129139AVIKASNVILG.EEE-GGG-EEE.xbbxaaabxbb.
1h9m_A_541h9m   A5767AVVKAPWVLLM.EEE-GGG-EEE.bbbxaaabxbb.
1hcb_*_321hcb   -3240.DIKTSETKH...EE-GGG-EE...xxxaaaxbx..
1hfo_A_941hfo   A99108VNLNGDDVGW..EE--GGG-EE..bxxxaaabxb..
1hye_A_1821hye   A182191MVPLLSATSI..EEE-GGG-EE..xbxxaaabbb..
1hyh_A_2031hyh   A203211.FVAWSTVRV...EE-TTT-EE...bxxaaaxbb..
1i0a_A_2711i0a   A271280VTLSDAYSTG..EE--GGG-EE..bbxxaaabbb..
1i0z_A_1981i0z   A198206.VAVWSGVNV...EE-GGG-EE...bxxaaaxbb..
1i10_A_1971i10   A197205.VPVWSGMNV...EE-GGG-EE...bxxaaaxbb..
1itv_A_1291itv   A129137.MVDPRSASE...EE-GGG-EE...bbxaaapbx..
1iz9_A_1921iz9   A192200.FPDLFHAEV...EEE-SS-EE...bxxaaaxbb..
1j83_A_11421j83   A11421151IRVWTNNFVA..EEE-GGG-EE..bbbbaaaxbx..
1jkg_B_4721jkg   B472483TQHDVNSFVVDIEEE-GGG-EEEEbbxxaaapbbbx
1jyk_A_2041jyk   A207216EELEGNSIYE..EE--TTSEEE..bxxxaaabbx..
1k7w_A_2731k7w   A273283LTLSDAFSTGA.EE--GGG-EEE.bbxxaaabbbb.
1k8k_A_1841k8k   A184193.YVIGSCIKHI..EE-GGG-EEE..bxxaaaxbbb.
1keq_A_451keq   A4960VSYDAASCRYLWEE--GGGEEEEEbbbbaaaxabbb
1l3a_C_1421l3a   C142152.QYDWSRKQVFS.EE-GGG-EEEE.bbxaaaxbbbx
1l5w_A_1701l5w   A170180.RHNEALDVQVG.EE-GGG-EEEE.bbxaaaxbxbx
1lld_A_1851lld   A185193.VPLWESATI...EE-TTS-EE...bxxaaaxbb..
1lug_A_311lug   A3139VDIDTHTAK...EE-TTT-EE...bxxxaaaxb...
1lug_A_441lug   A4758LSVSYDQATSLREEE-TT--EEEExbbbaaaxbxab
1n67_A_4241n67   A424435ALIDQQNTSIKVEE-STTT-EEEExbbbaaabbbbb
1noa_*_441noa   -4556LACNPADFSSVTEEE-GGG-EEEEbbbbaaaxbbbb
1now_A_621now   A7081LHLAPENFYISHEE--GGG-EEEEbbbbaaabbbbx
1nu6_A_3371nu6   A337348WNCLVARQHIEMEEE-TTT-EEEEbbbxaaapbbbb
1o6z_A_1991o6z   A199208QVPVFSKVSV..EEE-GGG-EE..xbxxaaaxbb..
1otf_A_401otf   A4453TEMPKNHFGI..EEE-GGG-EE..bxbxaaabbb..
1oxx_K_3371oxx   K340351VYVRKDKIKVFEEEE-GGG-EEEEbbbxaaaxbbbx
1p9r_A_3831p9r   A394405RTLCPDCKEPYEEEE-TTT-EEEExxpxaaaxbwbb
1pfv_A_1341pfv   A134144MFLPDRFVKGT.EE--GGGEEEE.bxbxaaabbex.
1pze_A_2001pze   A200208.VPLVRYITV...EE-GGG-EE...bxxaaapbb..
1qz5_A_1691qz5   A169178.YALPHAIMRL..EE-GGG-EEE..bxbaaaxbbb.
1r6w_A_3101r6w   A310318.VVEVDALER...EE-GGGSEE...bxxaaaxxb..
1roc_A_1351roc   A137148RNILAEKPRVTREEE-TTS-EEEExbxxaaaxbxbb
1svb_*_1261svb   -130141HVYDANKIVYTVEE--TTT-EEEEbbxbaaaxbbbb
1t2d_A_1861t2d   A186194.VLLKRYITV...EE-GGG-EE...xxxaaaxbb..
1v9e_A_311v9e   A3139.DIDTKAVVQ...EE-GGG-EE...xxxaaaxbb..
1xbr_A_1801xbr   A182193SHSFPETQFIAVEEE-GGG-EEEEbbbbaaaxbbxb
1yag_A_1691yag   A169178.FSLPHAILRI..EE-GGG-EEE..bxbaaaxbbb.
3vub_*_593vub   -6172WRMMTTDMASVPEEE-GGG-EEEEbbxxaaapbxbx
4mdh_A_1914mdh   A191200.YPDVNHAKVK..EEE-TT-EEE..bwxaaaxbbb.
7mdh_A_2347mdh   A234242.VPDFLNAKI...EEE-SS-EE...bxxaaaxbb..
9ldt_A_2009ldt   A200208.VPVWSGVNV...EE-GGG-EE...bxxaaaxbb..
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a5z_*_2001a5z   *     FBPFRUCTOSE-1,6-DIPHOSPHATE M - 207
1a5z_*_2001a5z   *     FBPFRUCTOSE-1,6-DIPHOSPHATE I - 208
1amf_*_1801amf   *     MOOMOLYBDATE ION Y - 196
1b9m_A_1771b9m   A     MSESELENOMETHIONINE V - 187
1b9m_A_1771b9m   A     MSESELENOMETHIONINE G - 188
1b9m_A_1771b9m   A     MSESELENOMETHIONINE I - 189
1b9m_A_2461b9m   A     MSESELENOMETHIONINE V - 247
1b9m_A_2461b9m   A     MSESELENOMETHIONINE T - 248
1b9m_A_2461b9m   A     MSESELENOMETHIONINE A - 249
1f0l_A_4411f0l   A     APUADENYLYL-3'-5'-PHOSPHO-URIDINE-3'-MONOPHOSPHATE K - 445
1f0l_A_4411f0l   A     APUADENYLYL-3'-5'-PHOSPHO-URIDINE-3'-MONOPHOSPHATE S - 446
1g29_1_3501g29   1     MGMAGNESIUM ION K - 359
1g41_A_2961g41   A     ADPADENOSINE-5'-DIPHOSPHATE S - 308
1gd0_A_941gd0   A     CITCITRIC ACID N - 97
1gd0_A_941gd0   A     CITCITRIC ACID Y - 99
1h9m_A_541h9m   A     MOOMOLYBDATE ION P - 62
1h9m_A_541h9m   A     MOOMOLYBDATE ION V - 64
1h9m_A_541h9m   A     MOOMOLYBDATE ION L - 65
1h9m_A_541h9m   A     MOOMOLYBDATE ION L - 66
1h9m_A_1261h9m   A     MOOMOLYBDATE ION S - 134
1h9m_A_1261h9m   A     MOOMOLYBDATE ION V - 136
1h9m_A_1261h9m   A     MOOMOLYBDATE ION I - 137
1h9m_A_1261h9m   A     MOOMOLYBDATE ION L - 138
1jyk_A_2041jyk   A     MSESELENOMETHIONINE L - 209
1jyk_A_2041jyk   A     MSESELENOMETHIONINE S - 213
1jyk_A_2041jyk   A     MSESELENOMETHIONINE I - 214
1k7w_A_2731k7w   A     AS1ARGININOSUCCINATE T - 281
1k7w_A_2731k7w   A     AS1ARGININOSUCCINATE G - 282
1k7w_A_2731k7w   A     AS1ARGININOSUCCINATE A - 283
1now_A_621now   A     NAGN-ACETYL-D-GLUCOSAMINE M - 65
1now_A_621now   A     NAGN-ACETYL-D-GLUCOSAMINE T - 66
1now_A_621now   A     NAGN-ACETYL-D-GLUCOSAMINE P - 67
1now_A_621now   A     NAGN-ACETYL-D-GLUCOSAMINE N - 68
1now_A_621now   A     NAGN-ACETYL-D-GLUCOSAMINE L - 69
1oxx_K_3371oxx   K     IODIODIDE ION Y - 341
1oxx_K_3371oxx   K     IODIODIDE ION V - 349
1oxx_K_3371oxx   K     IODIODIDE ION F - 350
1oxx_K_3371oxx   K     IODIODIDE ION E - 351
1p9r_A_3831p9r   A     MSESELENOMETHIONINE L - 388
1p9r_A_3831p9r   A     ZNZINC ION C - 397
1p9r_A_3831p9r   A     ZNZINC ION P - 398
1p9r_A_3831p9r   A     ZNZINC ION D - 399
1p9r_A_3831p9r   A     ZNZINC ION C - 400
1p9r_A_3831p9r   A     ZNZINC ION K - 401
1qz5_A_1691qz5   A     KABKABIRAMIDE C Y - 169
1qz5_A_1691qz5   A     KABKABIRAMIDE C A - 170
1qz5_A_1691qz5   A     HIC4-METHYL-HISTIDINE R - 177
1qz5_A_1691qz5   A     CACALCIUM ION R - 177
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1f0l_A_4411f0l   A CATREFERS TO CATALYTIC SITES - 446
1h9m_A_541h9m   A AC3MOO BINDING SITE FOR CHAIN A1144 SYMMETRY RELATED SUBUNITS CONTRIBUTE TO THE BINDING SITEK - 60
1h9m_A_541h9m   A AC3MOO BINDING SITE FOR CHAIN A1144 SYMMETRY RELATED SUBUNITS CONTRIBUTE TO THE BINDING SITEA - 61
1h9m_A_1261h9m   A AC4MOO BINDING SITE FOR CHAIN A1145 SYMMETRY RELATED SUBUNITS CONTRIBUTE TO THE BINDING SITEK - 132
1h9m_A_1261h9m   A AC4MOO BINDING SITE FOR CHAIN A1145 SYMMETRY RELATED SUBUNITS CONTRIBUTE TO THE BINDING SITEA - 133
1o6z_A_1991o6z   A AC1CL BINDING SITE FOR CHAIN AK - 205

Clusters included in this Subclass
CLUSTER: AR.3.121
CLUSTER: AR.4.133
CLUSTER: AR.4.170
CLUSTER: AR.4.18
CLUSTER: AR.4.40
CLUSTER: AR.5.185
CLUSTER: AR.5.25
CLUSTER: AR.5.41
CLUSTER: AR.5.9
CLUSTER: AR.6.20
CLUSTER: AR.6.6
CLUSTER: AR.6.89
CLUSTER: AR.7.28