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Information on SUBCLASS 3.4.1
Subclass Accession number: 5487
Subclass: 3.4.1 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 64

Average sequence ID (%) : 11.8 +/- 13.9
Average RMSD (Å) : 0.816 +/- 0.211

Consensus geometry
d (Å): 9 delta (°): 45-90 theta (°): 135-180 rho (°): 135-180
Consensus Sequence: XXXXphX
(φψ)-conformation: aabaabb
Pattern: xx[afiklmv]x[adeknqrst]x[deknpqrst][adegknqrst][acfgiklmtv]x[acfgilmptv]x
Conservation:-0.290-1.5860.813-0.2510.296-1.0551.5490.6151.590-0.953-0.388-0.340
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a04_A_161a04   A2435QLISMAPDITVVHHHTT-TTEEEEaaaaabaabbxa
1a8l_*_381a8l   -4758ELSELTDKLSYEHHHTT-TTEEEEaaaaabaabbbb
1aiu_*_331aiu   -4455SLSEKYSNVIFLHHHHH-TTEEEEaaaaabaabbbb
1amf_*_1711amf   -172183SDAVASKGVKVVHHHHH-SSEEEEaaaaaxaabbxa
1c7k_A_151c7k   A2435IWNSSVRNVQLRHHHHH-SSEEEEaaaaabaabbbb
1chu_A_1451chu   A146157SKALNHPNIRVLHHHHH-TTEEEEaaaaaxaabbbx
1cqx_A_3091cqx   A316327EAAKTYENLDLFHHHHH-TTEEEEaaaaaxaabbbb
1din_*_1761din   -184195EGFGANPLLQVHHHHTT-TTEEEEaaaaabaaxbbb
1dnp_A_1071dnp   A115126EVERALRNVVCEHHHHH-TTSEEEaaaaaxaabxbb
1dpe_*_2451dpe   -246257ARMKQDKSINLMHHHHH-TTEEEEaaaaaxaabxxx
1e5e_A_3191e5e   A325335KLLDNLKLITL.HHHHT-SSSEE.aaaaaxaaxxx.
1e6u_A_141e6u   A2132RQLEQRGDVELVHHHTT-TTEEEEaaaaabaabbxb
1e8c_A_2431e8c   A247258RWLAKLPDAVAVHHHTT-TT-EEEaaaaabaaxbxb
1elu_A_2981elu   A314324RGLNQLPHVHC.HHHHHSTTEEE.aaaaaxaabbx.
1euc_A_1091euc   A117128HRLLRQGKTRLIHHHTT-SS-EEEaaaaabaabxbb
1f6d_A_181f6d   A2132HALAKDPFFEAKHHHHH-TT--EEaaaaaxaabbbb
1f9m_A_471f9m   A5869KLAEEYLDVIFLHHHHH-TTSEEEaaaaabaabxbb
1feh_A_2111feh   A215226KNALNAPEKHVIHHHHH-TT-EEEaaaaaxaaxxxx
1fo8_A_2201fo8   A229240PLLKADPSLWCVHHHHH-TTEEEEaaaaabaababb
1g5t_A_981g5t   A113124KRMLADPLLDMVHHHTT-TT-SEEaaaaaxaaxabb
1gc0_A_3211gc0   A327337RFMNALQLFSR.HHHHH-SSSEE.aaaaapaaxxx.
1gd1_O_101gd1   O1728RAALKNPDIEVVHHHTT-SSEEEEaaaaabaabbxa
1gh2_A_351gh2   A4657SMSNKYPQAVFLHHHHH-TTSEEEaaaaabaabbbb
1gpu_A_5041gpu   A512523KNSLESKHTPSIHHHHH-SS--EEaaaaaxaabwbb
1gud_A_1461gud   A157168EAFKKASQIKLVHHHHT-TTEEEEaaaaabaaxbxa
1hrd_A_3521hrd   A356367RFLMQQPNMVVAHHHHH-TT-EEEaaaaaxaabbbb
1hyu_A_1321hyu   A141152LMAVLNPRIKHTHHHHH-TTEEEEaaaaabaabbbb
1ii2_A_111ii2   A1727WALKIEKDSRL.HHHHH-TT-EE.aaaaaxaaxbb.
1ik6_A_101ik6   A2031EEMERDERVVVLHHHHH-TTEEEEaaaaabaaxbbb
1itw_A_651itw   A7081GKLATTPDANIIHHHTTSTT-EEEaaaaabaapbbb
1iu8_A_181iu8   A2536ALSERIPEVVGEHHHHH-TTEEEEaaaaabaaxbbb
1j1i_A_2381j1i   A243254KFLDLIDDSWGYHHHHH-TTEEEEaaaaaxaabbbb
1j3l_A_51j3l   A718DLSDLYPEGEALHHHHH-TTSEEEaaaaabaaxbbb
1jlr_A_221jlr   A2838DIITRFPNVVL.HHHHH-TTEEE.aaaaabaaxbx.
1jyh_A_1071jyh   A115125NSLLQDSAYEM.HHHTT-SSEEE.aaaaaxaabbx.
1jz7_A_5491jz7   A554565QAFRQYPRLQGGHHHHH-TTEEEEaaaaabaaxaee
1k4k_A_531k4k   A6272LAIADKPLFTL.HHHTT-TTEEE.aaaaabaabbb.
1kam_A_531kam   A6272LAIQSNPSFKL.HHHTT-TTEEE.aaaaabaaxbb.
1kng_A_931kng   A103114TELGKDKRFQLVHHHTT-TTSEEEaaaaaxaabbbb
1l8a_A_6451l8a   A647658IQSLTIPNCISYHHHTTSTTEEEEaaaaaxaabbbb
1lu4_A_10371lu4   A10481059QVAAANPAVTFVHHHHH-TTSEEEaaaaabaabxxb
1mpx_A_1461mpx   A156167WLVKNVSESNGKHHHHH-TTEEEEaaaaabaaxavb
1mqi_A_1241mqi   A125136EDLSKQTEIAYGHHHHT-SSSEEEaaaaabaaxxbb
1ni4_B_151ni4   B1526EELERDEKVFLLHHHHH-TTEEEEaaaaabaaxbbb
1nrw_A_1791nrw   A187198KRYEHAEDLTLVHHHTT-TTEEEEaaaaaxaabbbb
1oaa_*_1691oaa   -184195VLAAEEPSVRVLHHHHH-TTEEEEaaaaabaabxbb
1oi2_A_211oi2   A2839GLAKAHPSLTLHHHHHH-TTEEEEaaaaabaabbxx
1ovn_A_571ovn   A6879SAHKATKDLLIAHHHHH-SSEEEEaaaaabaabxbb
1p99_A_951p99   A100111QYKKAHKGTKISHHHHH-TT--EEaaaaabaabbbb
1pb7_A_2251pb7   A230240FEASQKCDLVT.HHHHH-TTEEE.aaaaabaabbb.
1php_*_3291php   -336347EALAEALDTYSVHHHHH-TT-EEEaaaaaxaabxbb
1pn0_A_171pn0   A2839EYVRQKPDLKVRHHHHHSTT--EEaaaaabaaxbbb
1q0r_A_2551q0r   A258269HLAGLIPTARLAHHHHTSTTEEEEaaaaabaaxbbb
1qna_A_401qna   A4252AIALQARNAEY.HHHHH-SSEEE.aaaaaxaabbb.
1r51_A_2271r51   A237248QILARQQLIETVHHHHH-TTEEEEaaaaabaaxabb
1r51_A_761r51   A8697HFIEKYNHIHAAHHHHH-TTEEEEaaaaabaaxabb
1s1q_A_181s1q   A2737NVITLYKDLKP.HHHHH-TTEEE.aaaaabaabbx.
1s29_A_631s29   A6877EAIRPSEKLV..HHHTT-SSEE..aaaaapaabb..
1s2d_A_191s2d   A3041ELLAKNPSIAHVHHHTT-TTEEEEaaaaaxaababb
1s4q_A_1221s4q   A127138AIKKTMPEAVTVHHHHH-TTSEEEaaaaabaaxxxb
1umd_B_61umd   B1627EEMAKDPRVVVLHHHHH-TTEEEEaaaaabaaxbbb
2bce_*_3942bce   -403414QHKSHAKSANTYHHHHH-SS--EEaaaaapaabxbb
2dap_*_132dap   -2031KLIAKQPDMDLVHHHTT-TTEEEEaaaaaxaabbxa
2gbp_*_152gbp   -2637QDAKAAPDVQLLHHHTT-TTEEEEaaaaabaabbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1c7k_A_151c7k   A     CACALCIUM ION E - 17
1c7k_A_151c7k   A     CACALCIUM ION N - 20
1dnp_A_1071dnp   A     MHF5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID V - 107
1dnp_A_1071dnp   A     MHF5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID N - 108
1dnp_A_1071dnp   A     MHF5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID E - 109
1e6u_A_141e6u   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE M - 14
1e6u_A_141e6u   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 15
1e6u_A_141e6u   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE G - 16
1e6u_A_141e6u   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL S - 17
1e6u_A_141e6u   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL R - 20
1e6u_A_141e6u   A     TRS2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL R - 21
1e8c_A_2431e8c   A     KCXLYSINE NZ-CARBOXYLIC ACID W - 248
1e8c_A_2431e8c   A     MSESELENOMETHIONINE V - 258
1f6d_A_181f6d   A     MSESELENOMETHIONINE P - 18
1f6d_A_181f6d   A     MSESELENOMETHIONINE L - 19
1f6d_A_181f6d   A     MSESELENOMETHIONINE V - 20
1f6d_A_181f6d   A     MSESELENOMETHIONINE H - 21
1f6d_A_181f6d   A     MSESELENOMETHIONINE F - 28
1f6d_A_181f6d   A     MSESELENOMETHIONINE F - 29
1f6d_A_181f6d   A     MSESELENOMETHIONINE E - 30
1f6d_A_181f6d   A     MSESELENOMETHIONINE A - 31
1feh_A_2111feh   A     HC12 IRON/2 SULFUR/5 CARBONYL/2 WATER INORGANIC CLUSTER M - 229
1fo8_A_2201fo8   A     MMCMETHYL MERCURY ION F - 220
1g5t_A_981g5t   A     MGMAGNESIUM ION D - 127
1g5t_A_981g5t   A     ATPADENOSINE-5'-TRIPHOSPHATE D - 127
1gd1_O_101gd1   O     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 10
1gd1_O_101gd1   O     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE I - 11
1gd1_O_101gd1   O     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE G - 12
1gd1_O_101gd1   O     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 13
1gd1_O_101gd1   O     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE N - 31
1gud_A_1461gud   A     ZNZINC ION E - 157
1gud_A_1461gud   A     ZNZINC ION K - 160
1j3l_A_51j3l   A     MSESELENOMETHIONINE L - 18
1jz7_A_5491jz7   A     DMSDIMETHYL SULFOXIDE W - 553
1jz7_A_5491jz7   A     DMSDIMETHYL SULFOXIDE R - 557
1k4k_A_531k4k   A     XEXENON L - 60
1k4k_A_531k4k   A     XEXENON A - 63
1k4k_A_531k4k   A     XEXENON I - 64
1k4k_A_531k4k   A     XEXENON F - 70
1mpx_A_1461mpx   A     MSESELENOMETHIONINE H - 146
1mpx_A_1461mpx   A     CACALCIUM ION H - 146
1mpx_A_1461mpx   A     MSESELENOMETHIONINE A - 147
1mpx_A_1461mpx   A     CACALCIUM ION A - 147
1mpx_A_1461mpx   A     GOLGLYCEROL A - 147
1mpx_A_1461mpx   A     MSESELENOMETHIONINE T - 148
1mpx_A_1461mpx   A     GOLGLYCEROL T - 148
1mpx_A_1461mpx   A     MSESELENOMETHIONINE D - 149
1mpx_A_1461mpx   A     CACALCIUM ION D - 149
1mpx_A_1461mpx   A     MSESELENOMETHIONINE A - 150
1mpx_A_1461mpx   A     GOLGLYCEROL W - 151
1mpx_A_1461mpx   A     MSESELENOMETHIONINE D - 152
1mpx_A_1461mpx   A     CACALCIUM ION D - 152
1mpx_A_1461mpx   A     GOLGLYCEROL D - 152
1mpx_A_1461mpx   A     MSESELENOMETHIONINE T - 153
1mpx_A_1461mpx   A     MSESELENOMETHIONINE I - 154
1mpx_A_1461mpx   A     MSESELENOMETHIONINE W - 156
1mpx_A_1461mpx   A     MSESELENOMETHIONINE V - 168
1mpx_A_1461mpx   A     CACALCIUM ION V - 168
1ni4_B_151ni4   B     MSESELENOMETHIONINE E - 15
1ni4_B_151ni4   B     MSESELENOMETHIONINE E - 16
1ni4_B_151ni4   B     MSESELENOMETHIONINE L - 17
1ni4_B_151ni4   B     MSESELENOMETHIONINE E - 18
1ni4_B_151ni4   B     MSESELENOMETHIONINE V - 23
1ni4_B_151ni4   B     MSESELENOMETHIONINE L - 25
1oaa_*_1691oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE Y - 171
1oaa_*_1691oaa   *     OAAOXALOACETATE ION Y - 171
1oaa_*_1691oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE K - 175
1oaa_*_1691oaa   *     OAAOXALOACETATE ION K - 175
1oaa_*_1691oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE R - 178
1oaa_*_1691oaa   *     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE A - 198
1p99_A_951p99   A     METMETHIONINE F - 97
1p99_A_951p99   A     GLYGLYCINE V - 117
1p99_A_951p99   A     METMETHIONINE V - 117
1p99_A_951p99   A     METMETHIONINE L - 118
1pn0_A_171pn0   A     FADFLAVIN-ADENINE DINUCLEOTIDE P - 17
1pn0_A_171pn0   A     FADFLAVIN-ADENINE DINUCLEOTIDE A - 18
1pn0_A_171pn0   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 19
1pn0_A_171pn0   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 41
1q0r_A_2551q0r   A     AKT10-DECARBOXYMETHYLACLACINOMYCIN T (DCMAT) H - 255
1r51_A_761r51   A     FCYFREE CYSTEINE H - 98
1r51_A_761r51   A     FCYFREE CYSTEINE N - 100
1r51_A_2271r51   A     AZA8-AZAXANTHINE V - 227
1r51_A_2271r51   A     AZA8-AZAXANTHINE Q - 228
1r51_A_2271r51   A     AZA8-AZAXANTHINE N - 254
1s1q_A_181s1q   A     MSESELENOMETHIONINE T - 21
1s1q_A_181s1q   A     MSESELENOMETHIONINE T - 25
1s1q_A_181s1q   A     MSESELENOMETHIONINE K - 36
1s1q_A_181s1q   A     MSESELENOMETHIONINE P - 37
1s29_A_631s29   A     MSESELENOMETHIONINE E - 65
1s29_A_631s29   A     MSESELENOMETHIONINE V - 77
2gbp_*_152gbp   *     GLCGLUCOSE N - 15
2gbp_*_152gbp   *     GLCGLUCOSE F - 16
2gbp_*_152gbp   *     GLCGLUCOSE M - 17
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e6u_A_141e6u   A AC1NAP BINDING SITE FOR CHAIN AM - 14
1gud_A_1461gud   A ZN2ZN BINDING SITE FOR CHAIN AE - 157
1oi2_A_211oi2   A AC3SO4 BINDING SITE FOR CHAIN AA - 32
1oi2_A_211oi2   A AC3SO4 BINDING SITE FOR CHAIN AH - 33
1oi2_A_211oi2   A AC3SO4 BINDING SITE FOR CHAIN AP - 34
1oi2_A_211oi2   A AC3SO4 BINDING SITE FOR CHAIN AS - 35

Clusters included in this Subclass
CLUSTER: HE.2.25
CLUSTER: HE.3.206
CLUSTER: HE.3.255
CLUSTER: HE.3.29
CLUSTER: HE.4.17
CLUSTER: HE.4.65
CLUSTER: HE.5.30
CLUSTER: HE.5.72
CLUSTER: HE.6.9
CLUSTER: HE.7.47