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Information on SUBCLASS 2.4.1
Subclass Accession number: 6128
Subclass: 2.4.1 PSSM
Type: HA beta-beta hairpin
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 82

Average sequence ID (%) : 8.7 +/- 12.3
Average RMSD (Å) : 0.435 +/- 0.201

Consensus geometry
d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 45-90
Consensus Sequence: XXXXXX
(φψ)-conformation: bbplbb
Pattern: xxxx[adegknqs]xxxx
Conservation:-0.188-0.919-0.1710.0702.349-0.622-0.107-0.412-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a05_A_2631a05   A266274SLGEGRAMYEE-SS-EEEbbbxvbbbb
1ae9_A_3431ae9   A343351RDDRGREWDEE-SS-EEExxxxgxbbx
1aih_A_2191aih   A219226.VMPYKITF.EETTEEEE.xbpvbbbb
1aun_*_1391aun   -139144.RVPGGC...EETTEE...xbpvbb..
1bif_*_4181bif   -423431TPVAYGCKVEE-SSSEEEbwbxvbbxb
1c5c_H_881c5c   H9298CVRIAYW..EEETTEE..xbbpvbb..
1cvr_A_851cvr   A8592KITPGIKS.EEETTEEE.xbbpvbbb.
1cyx_*_1271cyx   -132140VSMDWKWFFEEETTEEEEbxbxvbbbb
1czf_A_2371czf   A258266KTISGATGSEEETT--EEbbxpvxbeb
1dan_L_601dan   L6270KDQLQSYICEEETTEEEEbxbxvbbbb
1dci_A_571dci   A6169SAQKHVLHVEEETTEEEExabpvbbbb
1deu_A_1101deu   A112120CNEFKECHAEEETTEEEEbabpvbbbx
1dl5_A_1841dl5   A189197KKKDPYLVGEEETTEEEEbxbpwbbbb
1dl5_A_2651dl5   A268276EFLDDRMRIEEETTEEEExxbxlbbbb
1dpy_A_701dpy   A7179TCTQPNLTCEEETTEEEEbbbpwxbbx
1dqt_A_661dqt   A6977TFNESRVNLEEETTEEEEbbbpvbbxx
1e0s_A_391e0s   A4250IPTVGFNVEEEETTEEEEbwbpvbbbb
1edm_B_611edm   B6371KDDINSYECEEETTEEEEbxbxlbbbb
1edy_A_701edy   A7482EVNTNHVLIEEETTEEEEbbbplbbbb
1ei5_A_2821ei5   A289297GALRGWRCQEEETTEEEEbbbpvbbbb
1ejd_A_1351ejd   A137145KLEEGYVKAEEETTEEEEbbbpgbbbb
1epa_A_751epa   A7886VTRLSGKKEEEETTEEEEbbxxlbbbb
1f1j_A_1451f1j   A145151.GEENVIY..EETTEEE..bbpvbbx.
1f32_A_721f32   A7482FNFVGCSVLEEETTEEEEbbbxgbbbb
1f3u_A_411f3u   A4654AKTQGRTEVEEETTEEEEbbbxlbbbb
1f42_A_21f42   A311ELKKDVYVVEEETTEEEExabpvbbbb
1ffv_C_1531ffv   C153159FLGTYMT..EEETTEE..xabxvbb..
1fzq_A_431fzq   A4654TPTQGFNIKEEETTEEEEbabpvbbbb
1g0u_G_2101g0u   G214222VATKDKFFTEEETTEEEEbbbpvbbbb
1g0u_I_21g0u   I614MTGKDCVAIEEETTEEEEbbbxlbbbb
1g1t_A_1311g1t   A134142VETINNYTCEEETTEEEEbxbxlbbbb
1g2n_A_3221g2n   A324332CLMPGMTLHEEETTEEEExabpvbbbx
1g38_A_2981g38   A298303.LKPGWV...EETTEE...xbxvbb..
1gg4_A_3181gg4   A321329QLAENQLLLEEETTEEEExabxUbbbb
1gmu_A_1001gmu   A100108QIMPGELRYEEETTEEEEbbbxvbbbb
1gsm_A_1791gsm   A186194MRLPGLELSEEETTEEEEbbbpvbbbb
1gw0_A_121gw0   A1218CWSDGFD..EEETTEE..xabpvbb..
1gx3_A_2251gx3   A228236VHRSGATEHEEETTEEEEbbbxvbbbb
1h6d_A_3531h6d   A355363VQTPGHANQEEETTEEEEbbbpvbbxx
1h8n_A_2231h8n   A227233CARWGYW..EEETTEE..bbbpvbb..
1hbn_B_2831hbn   B286294KELTDYKVYEEETTEEEEbbxxlbxxx
1hg8_A_2481hg8   A269277KSNSGATGTEEETT--EEbbxxvbbbb
1i1q_A_931i1q   A95103DVLPAGRVLEEETTEEEEbbbxlbbbb
1i2h_A_10671i2h   A10691077KTSQKFGQWEEETTEEEExabpUbbbb
1i7d_A_241i7d   A2432RKGDGFIECEEETTEEEEbxbxgbbxb
1i7q_A_931i7q   A95103QARPNGRELEEETTEEEEbxbxlbbbb
1ivy_A_4071ivy   A414422KEFSHIAFLEEESSEEEEbbbxvbbbb
1iz5_A_1541iz5   A158166IARENEFIMEEETTEEEEbbbplbbbb
1j75_A_1581j75   A160168SPEPATWSIEEETTEEEEbabxlbbbx
1jdw_*_3081jdw   -310318IIGPGIVLSEEETTEEEExabxvbbxb
1jje_A_81jje   A1119KLDEGVYVHEEETTEEEExabpvbbbb
1jl2_A_181jl2   A2634LRYRGREKTEE-SS-EEEbbbpgxbbb
1kfi_A_3141kfi   A316323ILGRQFFV.EEETTEEE.bbbplbbx.
1kuu_A_301kuu   A3341SIQEERVAVEEETTEEEExxbxlbbbb
1l2l_A_3411l2l   A344352FHTYGYYLAEEETTEEEExbbxgbbbb
1led_*_291led   -2936TRIPGALQ.EEETBEEE.bxbpvbxx.
1li4_A_3171li4   A320328NIKPQVDRYEEETTEEEExabpvbbbx
1lvl_*_1181lvl   -120128VLDGKQVEVEEETTEEEExabxNbbbb
1m72_A_1371m72   A137143.GELGMLY..EETTEEE..bbpvbbb.
1n62_C_1521n62   C153159YQGAYFT..EEETTEE..babxvbb..
1nrz_A_1151nrz   A116123QLTKAVSL.EEETTEEE.xabpvbbb.
1nzi_A_1311nzi   A133141NNFIGGYFCEEETTEEEEbxbxvbbbb
1o63_A_341o63   A3441REGKDIVC.EEETTEEE.bbbpvbbb.
1o94_A_5921o94   A596604RIEPGRMEIEEETTEEEEbbbpvbbxb
1oej_A_911oej   A94102FHRNNETTSEEETTEEEEbbbpvbbbb
1ofz_A_1681ofz   A172180AIGPGRLRIEEETTEEEExabpvbbbb
1olz_A_401olz   A4351IGAREAVFAEEEBTEEEEbxbxvbbbb
1p32_A_1171p32   A122130RKVAGEKITEEETTEEEEbbbpvbbbb
1p6p_A_461p6p   A5159SKTPKQTHSEEETTEEEEbbbpvbbbb
1p9l_A_1921p9l   A198206FGTEGETLTEEETTEEEEbbbpvbbbb
1plq_*_1571plq   -161169MITKETIKFEEETTEEEEbbbplbbbb
1pyo_A_1131pyo   A113119.GVEGAIY..EETTEEE..bbpvbbx.
1qh5_A_1361qh5   A136141.LFVAGC...EETTEE...bbxvbb..
1qtn_A_3181qtn   A318324.GDKGIIY..EETTEEE..bbpvbbx.
1qz3_A_471qz3   A5361MDLPGRTLKEEETTEEEEbxbxvbbbx
1rwh_A_3841rwh   A387395HRGPGWALSEEETTEEEEbbbpvbbxb
1s7j_A_2341s7j   A238246EVKENRVIIEEETTEEEEbbbxvbbbb
1tht_A_1641tht   A165173LDFEGHKLGEEETTEEEEbbbxNbbbx
1usm_A_431usm   A4553TVEWGRVTVEEETTEEEEbbbpvbbbb
1uuh_A_801uuh   A8088GFIEGHVVIEEETTEEEEbxbxvbbbb
1uzp_A_16211uzp   A16231631INTFGSFQCEEETTEEEEbxbxvbbbb
2a2u_A_412a2u   A4654DVLENSLGFEEETTEEEEbbbxlbbbb
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a05_A_2631a05   A     IPM3-ISOPROPYLMALIC ACID E - 275
1bif_*_4181bif   *     ATGPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER A - 426
1bif_*_4181bif   *     ATGPHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER Y - 427
1c5c_H_881c5c   H     TK42-ACETYLAMINO-NAPTHALENE-1,5-DISULFONIC ACID V - 93
1c5c_H_881c5c   H     TK42-ACETYLAMINO-NAPTHALENE-1,5-DISULFONIC ACID R - 94
1c5c_H_881c5c   H     TK42-ACETYLAMINO-NAPTHALENE-1,5-DISULFONIC ACID I - 95
1cyx_*_1271cyx   *     CUADINUCLEAR COPPER ION M - 134
1cyx_*_1271cyx   *     CUADINUCLEAR COPPER ION W - 136
1cyx_*_1271cyx   *     CUADINUCLEAR COPPER ION W - 138
1czf_A_2371czf   A     NAGN-ACETYL-D-GLUCOSAMINE K - 239
1czf_A_2371czf   A     NAGN-ACETYL-D-GLUCOSAMINE N - 240
1czf_A_2371czf   A     NAGN-ACETYL-D-GLUCOSAMINE T - 242
1czf_A_2371czf   A     ZNZINC ION E - 252
1czf_A_2371czf   A     NAGN-ACETYL-D-GLUCOSAMINE E - 269
1dan_L_601dan   L     FUCFUCOSE S - 60
1dan_L_601dan   L     FUCFUCOSE C - 61
1dan_L_601dan   L     CACALCIUM ION D - 63
1dan_L_601dan   L     CACALCIUM ION Q - 64
1dan_L_601dan   L     CACALCIUM ION L - 65
1dan_L_601dan   L     CACALCIUM ION Q - 66
1dan_L_601dan   L     CACALCIUM ION S - 67
1dan_L_601dan   L     GLCGLUCOSE Y - 68
1dan_L_601dan   L     FUCFUCOSE F - 71
1dl5_A_1841dl5   A     CDCADMIUM ION Y - 194
1dl5_A_2651dl5   A     CDCADMIUM ION D - 271
1dl5_A_2651dl5   A     CDCADMIUM ION D - 272
1dl5_A_2651dl5   A     CDCADMIUM ION G - 278
1edm_B_611edm   B     CACALCIUM ION D - 64
1edm_B_611edm   B     CACALCIUM ION D - 65
1edm_B_611edm   B     CACALCIUM ION I - 66
1edm_B_611edm   B     CACALCIUM ION N - 67
1edm_B_611edm   B     CACALCIUM ION S - 68
1ejd_A_1351ejd   A     PO4PHOSPHATE ION E - 135
1ejd_A_1351ejd   A     PO4PHOSPHATE ION K - 137
1ejd_A_1351ejd   A     PO4PHOSPHATE ION K - 144
1ejd_A_1351ejd   A     HAICYCLOHEXYLAMMONIUM ION K - 144
1ejd_A_1351ejd   A     HAICYCLOHEXYLAMMONIUM ION A - 145
1ejd_A_1351ejd   A     PO4PHOSPHATE ION S - 146
1f42_A_21f42   A     NAGN-ACETYL-D-GLUCOSAMINE W - 2
1f42_A_21f42   A     MANALPHA-D-MANNOSE W - 2
1f42_A_21f42   A     NAGN-ACETYL-D-GLUCOSAMINE E - 3
1f42_A_21f42   A     MANALPHA-D-MANNOSE E - 3
1f42_A_21f42   A     NAGN-ACETYL-D-GLUCOSAMINE L - 4
1f42_A_21f42   A     NAGN-ACETYL-D-GLUCOSAMINE V - 10
1f42_A_21f42   A     NAGN-ACETYL-D-GLUCOSAMINE E - 12
1fzq_A_431fzq   A     GDPGUANOSINE-5'-DIPHOSPHATE K - 54
1g2n_A_3221g2n   A     EPHL-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE M - 323
1g2n_A_3221g2n   A     EPHL-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE L - 325
1g2n_A_3221g2n   A     EPHL-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL-PHOSPHATIDYLETHANOLAMINE L - 331
1gg4_A_3181gg4   A     MSESELENOMETHIONINE L - 327
1gg4_A_3181gg4   A     MSESELENOMETHIONINE L - 329
1gg4_A_3181gg4   A     MSESELENOMETHIONINE D - 330
1h8n_A_2231h8n   A     GOLGLYCEROL R - 229
1jje_A_81jje   A     ZNZINC ION K - 8
1jje_A_81jje   A     ACTACETATE ION K - 8
1jje_A_81jje   A     ZNZINC ION E - 10
1jje_A_81jje   A     ACTACETATE ION E - 10
1jje_A_81jje   A     ZNZINC ION V - 18
1jje_A_81jje   A     ZNZINC ION T - 20
1jje_A_81jje   A     ACTACETATE ION T - 20
1jje_A_81jje   A     ACTACETATE ION F - 22
1led_*_291led   *     NAGN-ACETYL-D-GLUCOSAMINE T - 29
1lvl_*_1181lvl   *     FADFLAVIN-ADENINE DINUCLEOTIDE A - 118
1lvl_*_1181lvl   *     FADFLAVIN-ADENINE DINUCLEOTIDE K - 119
1m72_A_1371m72   A     ASKDEHYDROXYMETHYLASPARTIC ACID G - 137
1m72_A_1371m72   A     ASKDEHYDROXYMETHYLASPARTIC ACID E - 138
1n62_C_1521n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE Y - 152
1nzi_A_1311nzi   A     CACALCIUM ION N - 134
1nzi_A_1311nzi   A     CACALCIUM ION F - 135
1nzi_A_1311nzi   A     CACALCIUM ION I - 136
1nzi_A_1311nzi   A     CACALCIUM ION G - 137
1nzi_A_1311nzi   A     CACALCIUM ION G - 138
1nzi_A_1311nzi   A     CACALCIUM ION Y - 139
1o63_A_341o63   A     MSESELENOMETHIONINE R - 34
1o63_A_341o63   A     MSESELENOMETHIONINE C - 41
1ofz_A_1681ofz   A     AFLALPHA-L-FUCOSE I - 173
1ofz_A_1681ofz   A     FULBETA-L-FUCOSE G - 176
1ofz_A_1681ofz   A     FULBETA-L-FUCOSE R - 177
1ofz_A_1681ofz   A     AFLALPHA-L-FUCOSE R - 177
1ofz_A_1681ofz   A     FULBETA-L-FUCOSE L - 178
1ofz_A_1681ofz   A     AFLALPHA-L-FUCOSE R - 179
1ofz_A_1681ofz   A     AFLALPHA-L-FUCOSE Y - 181
1p9l_A_1921p9l   A     PDCPYRIDINE-2,6-DICARBOXYLIC ACID A - 192
1p9l_A_1921p9l   A     PG4TETRAETHYLENE GLYCOL E - 195
1p9l_A_1921p9l   A     PG4TETRAETHYLENE GLYCOL L - 197
1p9l_A_1921p9l   A     PG4TETRAETHYLENE GLYCOL T - 204
1p9l_A_1921p9l   A     PG4TETRAETHYLENE GLYCOL T - 206
1qh5_A_1361qh5   A     ZNZINC ION F - 137
1qh5_A_1361qh5   A     GTTGLUTATHIONE F - 137
1qh5_A_1361qh5   A     GTTGLUTATHIONE C - 141
1qtn_A_3181qtn   A     ASAASPARTIC ALDEHYDE G - 318
1uuh_A_801uuh   A     MSESELENOMETHIONINE I - 82
1uuh_A_801uuh   A     MSESELENOMETHIONINE E - 83
1uuh_A_801uuh   A     MSESELENOMETHIONINE H - 85
1uuh_A_801uuh   A     MSESELENOMETHIONINE V - 87
1uuh_A_801uuh   A     MSESELENOMETHIONINE I - 88
1uuh_A_801uuh   A     MSESELENOMETHIONINE P - 89
1uzp_A_16211uzp   A     SMSAMARIUM (III) ION N - 1624
1uzp_A_16211uzp   A     SMSAMARIUM (III) ION T - 1625
1uzp_A_16211uzp   A     SMSAMARIUM (III) ION F - 1626
1uzp_A_16211uzp   A     SMSAMARIUM (III) ION G - 1627
1uzp_A_16211uzp   A     SMSAMARIUM (III) ION S - 1628
1uzp_A_16211uzp   A     SMSAMARIUM (III) ION F - 1629
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1ofz_A_1681ofz   A AC4AFL BINDING SITE FOR CHAIN AR - 179
1uzp_A_16211uzp   A AC2SM BINDING SITE FOR CHAIN AN - 1624
1uzp_A_16211uzp   A AC2SM BINDING SITE FOR CHAIN AT - 1625
1uzp_A_16211uzp   A AC2SM BINDING SITE FOR CHAIN AS - 1628

Clusters included in this Subclass
CLUSTER: HA.1.5
CLUSTER: HA.3.13