Extending signalling pathways with protein-interaction networks. Application to apoptosis.


Extending signalling pathways with protein-interaction networks. Application to apoptosis.
Joan Planas-Iglesias, Emre Guney, Javier Garcia-Garcia, Kevin A. Robertson, Sobia Raza, Tom C. Freeman, Peter Ghazal and Baldo Oliva.
OMICS. 2012 May;16(5):245-56. Epub 2012 Mar 2. (PMID: 22385281)

New candidates found in Experimental network for ALD, iALD combinated scoring methods

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Annotated function Keyword validation new candidates ProMiner validation new candidates
automated transcript 51 54
annotated by orthology 1 8
interacts with nucleic acid 3 4
signaling pathways 6 11
folding related 4 5
other 5 15
Total 70 97

Keyword validation new candidates ProMiner validation new candidates
DVL2_HUMAN HSP7C_HUMAN
Q6Y4Q7_HUMAN CH60_HUMAN
IPYR_HUMAN MOAP1_HUMAN
Q3LRW4_HUMAN NF2L2_HUMAN
HSP7C_HUMAN TNR3_HUMAN
CH60_HUMAN FOXO3_HUMAN
ADT1_HUMAN Q6FHL2_HUMAN
Q53QD5_HUMAN BIRC3_HUMAN
Q96C41_HUMAN Q8TBA7_HUMAN
Q2XSC7_HUMAN Q71T04_HUMAN
Q5STV3_HUMAN BBC3_HUMAN
NF2L2_HUMAN Q8IZ48_HUMAN
Q5VWK3_HUMAN BIRC2_HUMAN
Q5T1L8_HUMAN TNAP3_HUMAN
HS90A_HUMAN Q5CAQ6_HUMAN
Q5T5T6_HUMAN PIN1_HUMAN
IKBB_HUMAN VDAC2_HUMAN
GRP75_HUMAN Q96IF6_HUMAN
HSPB1_HUMAN DVL2_HUMAN
Q7Z4M9_HUMAN CARD4_HUMAN
MK09_HUMAN Q5THJ6_HUMAN
Q49AR7_HUMAN Q5JUN9_HUMAN
Q8WZ49_HUMAN DEDD_HUMAN
TOP1_HUMAN PSN1_HUMAN
Q6DC98_HUMAN Q5VWK3_HUMAN
Q502X2_HUMAN O75569_HUMAN
Q5T1L7_HUMAN HS90A_HUMAN
Q53SE2_HUMAN Q5T5T6_HUMAN
Q6JSD9_HUMAN Q6F4C0_HUMAN
BCN1_HUMAN Q7L7Q8_HUMAN
Q6FH58_HUMAN BCLW_HUMAN
Q8TBA7_HUMAN SHLB1_HUMAN
Q3LRW1_HUMAN BIK_HUMAN
Q5JSD1_HUMAN Q5VWK1_HUMAN
Q5U675_HUMAN Q6Q322_HUMAN
Q3LRW2_HUMAN Q6IB40_HUMAN
Q5JSD2_HUMAN NEMO_HUMAN
Q5ZPJ1_HUMAN BNIP1_HUMAN
Q8WXU1_HUMAN CAN1_HUMAN
Q6IQ37_HUMAN Q6Y4Q7_HUMAN
LAM1_HUMAN MK01_HUMAN
K1C18_HUMAN IPYR_HUMAN
Q3LRW3_HUMAN Q7Z4M9_HUMAN
Q9BWK8_HUMAN ADT1_HUMAN
Q5VWK1_HUMAN BAG1_HUMAN
Q96IS6_HUMAN Q5T1L8_HUMAN
Q6Q322_HUMAN Q96C25_HUMAN
Q9BZL0_HUMAN IKBB_HUMAN
Q6IB40_HUMAN BIRC5_HUMAN
Q8IZ48_HUMAN Q8IY86_HUMAN
P2BA_HUMAN Q49AR7_HUMAN
CAN1_HUMAN Q5T1L7_HUMAN
M3K14_HUMAN BI1_HUMAN
Q71T04_HUMAN APR_HUMAN
Q5ZPJ0_HUMAN BCN1_HUMAN
DYNA_HUMAN Q6IQ37_HUMAN
NEMO_HUMAN K1C18_HUMAN
MK01_HUMAN Q53QD5_HUMAN
Q5CAQ6_HUMAN Q9BWK8_HUMAN
Q6DHV4_HUMAN Q96IS6_HUMAN
Q96HX7_HUMAN BFL1_HUMAN
Q9UHB7_HUMAN Q5JSD1_HUMAN
PIN1_HUMAN Q96C41_HUMAN
Q8IY86_HUMAN M3K14_HUMAN
VDAC2_HUMAN BNI3L_HUMAN
Q96IF6_HUMAN Q5JSD2_HUMAN
Q5CAQ7_HUMAN Q5CAQ7_HUMAN
TP4AP_HUMAN TP4AP_HUMAN
Q96H53_HUMAN Q96H53_HUMAN
Q8NFL2_HUMAN Q96HX7_HUMAN
Q5TZN6_HUMAN
BAP31_HUMAN
PDCD6_HUMAN
Q5STV3_HUMAN
GRAB_HUMAN
Q9HB75_HUMAN
PTN13_HUMAN
BNIP3_HUMAN
Q6DC98_HUMAN
Q9NRE6_HUMAN
TOP1_HUMAN
CRADD_HUMAN
LAM1_HUMAN
Q6DHV4_HUMAN
Q9UHB7_HUMAN
RIPK2_HUMAN
Q6LCG1_HUMAN
FKBP8_HUMAN
MCL1_HUMAN
HRK_HUMAN
P2BA_HUMAN
Q53SE2_HUMAN
Q5FVE7_HUMAN
DYNA_HUMAN
Q6LCB0_HUMAN
GR65_HUMAN
Q8NFL2_HUMAN
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