Extending signalling pathways with protein-interaction networks. Application to apoptosis.


Extending signalling pathways with protein-interaction networks. Application to apoptosis.
Joan Planas-Iglesias, Emre Guney, Javier Garcia-Garcia, Kevin A. Robertson, Sobia Raza, Tom C. Freeman, Peter Ghazal and Baldo Oliva.
OMICS. 2012 May;16(5):245-56. Epub 2012 Mar 2. (PMID: 22385281)

New candidates found in STRING+ expansion network at orthology filter at JEV = 1e-10 for SC, FF combinated scoring methods

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Annotated function ProMiner validation new candidates
automated transcript 126
annotated by orthology 10
interacts with nucleic acid 29
signaling pathways 39
folding related 3
other 25
Total 232

ProMiner validation new candidates
CYB5_HUMAN
Q7Z7F1_HUMAN
HSP7C_HUMAN
Q9NWA1_HUMAN
Q6PD60_HUMAN
Q96IS6_HUMAN
TBK1_HUMAN
SKIL_HUMAN
FOXO3_HUMAN
Q5TCI9_HUMAN
MED6_HUMAN
Q69BL8_HUMAN
O75525_HUMAN
TAOK3_HUMAN
Q9NP66_HUMAN
ERCC3_HUMAN
Q5T7S2_HUMAN
M4K5_HUMAN
Q5TEJ5_HUMAN
BIM_HUMAN
RAF1_HUMAN
PABP1_HUMAN
PA1B3_HUMAN
Q4G156_HUMAN
RPB2_HUMAN
BIRC3_HUMAN
Q8N5D7_HUMAN
AKT2_HUMAN
Q8TBA7_HUMAN
Q658U1_HUMAN
IL1B_HUMAN
Q5TEI9_HUMAN
Q4KMR7_HUMAN
PPP6_HUMAN
Q71T04_HUMAN
ZN281_HUMAN
Q9UHQ1_HUMAN
1433B_HUMAN
NF2L2_HUMAN
RB6I2_HUMAN
Q6NW12_HUMAN
Q9BTT4_HUMAN
BIRC2_HUMAN
TNAP3_HUMAN
RPB11_HUMAN
CNOT7_HUMAN
Q5CAQ6_HUMAN
Q2TB79_HUMAN
NCOR1_HUMAN
Q5SQL5_HUMAN
BCLW_HUMAN
RPB5_HUMAN
CO1A1_HUMAN
Q5SQL2_HUMAN
Q69BM2_HUMAN
RPB8_HUMAN
CCND3_HUMAN
CCND2_HUMAN
FEZ1_HUMAN
PRP4B_HUMAN
TISB_HUMAN
KCC1A_HUMAN
PSN1_HUMAN
SP1_HUMAN
TRA2B_HUMAN
Q9BR32_HUMAN
Q13289_HUMAN
EMD_HUMAN
Q6P2H9_HUMAN
Q5TEJ7_HUMAN
Q6GMY0_HUMAN
Q5T5T6_HUMAN
MED21_HUMAN
Q549U5_HUMAN
Q6F4C0_HUMAN
TM1L1_HUMAN
STK11_HUMAN
CPNS1_HUMAN
Q5T3J9_HUMAN
KS6A1_HUMAN
Q14342_HUMAN
Q5TD03_HUMAN
Q5SWX2_HUMAN
Q5SQL1_HUMAN
Q6DHW5_HUMAN
CDK2_HUMAN
UBF1_HUMAN
STK16_HUMAN
M3K3_HUMAN
SRBP1_HUMAN
FYN_HUMAN
Q6FGR6_HUMAN
Q69BM3_HUMAN
TRI37_HUMAN
Q69BM5_HUMAN
TR10C_HUMAN
Q5VUI8_HUMAN
ROAA_HUMAN
CDK8_HUMAN
Q6Q322_HUMAN
STK4_HUMAN
HMG2_HUMAN
Q6FG62_HUMAN
AP1_HUMAN
Q5CAQ7_HUMAN
VINC_HUMAN
Q5TCJ3_HUMAN
Q5U007_HUMAN
BNIP1_HUMAN
NOC4L_HUMAN
Q96KX3_HUMAN
B2L14_HUMAN
Q6Y4Q7_HUMAN
ZN646_HUMAN
ERN1_HUMAN
FBRL_HUMAN
Q7Z4M9_HUMAN
Q5T8J1_HUMAN
Q9NS52_HUMAN
DRAP1_HUMAN
ZN205_HUMAN
BAG1_HUMAN
Q6I9Y7_HUMAN
Q502Z6_HUMAN
Q69BL9_HUMAN
Q573B4_HUMAN
P78484_HUMAN
BIRC8_HUMAN
AAPK2_HUMAN
Q6IAY3_HUMAN
HIPK1_HUMAN
SYSM_HUMAN
Q5VXW5_HUMAN
ERCC2_HUMAN
Q8IY86_HUMAN
CSP9_HUMAN
TANK_HUMAN
Q5T1L7_HUMAN
Q8N717_HUMAN
Q5ZEZ1_HUMAN
Q5R3A8_HUMAN
Q69BL7_HUMAN
Q5VXW4_HUMAN
Q4ZG76_HUMAN
IASPP_HUMAN
Q4VBZ1_HUMAN
BTBD2_HUMAN
K1C18_HUMAN
TF65_HUMAN
LCK_HUMAN
AIOL_HUMAN
Q8IY43_HUMAN
BFL1_HUMAN
Q9UML1_HUMAN
Q4W5K7_HUMAN
RPB1_HUMAN
ARD1_HUMAN
Q5T7R8_HUMAN
Q5I6Y4_HUMAN
NOP5_HUMAN
M3K14_HUMAN
ZBTB9_HUMAN
ELL2_HUMAN
Q5R3K0_HUMAN
M4K3_HUMAN
NEMO_HUMAN
Q6NUL8_HUMAN
Q5TCJ4_HUMAN
Q69BM1_HUMAN
Q3SYD7_HUMAN
Q5TEJ0_HUMAN
Q69BM0_HUMAN
KLF4_HUMAN
BAT3_HUMAN
Q96H53_HUMAN
Q969I0_HUMAN
Q96HX7_HUMAN
RA51B_HUMAN
Q52LT4_HUMAN
CD2L6_HUMAN
ULE1A_HUMAN
BAP31_HUMAN
MAT1_HUMAN
Q69BL6_HUMAN
PDCD6_HUMAN
NPM_HUMAN
IMA2_HUMAN
Q5STV3_HUMAN
GRAB_HUMAN
Q5VZF1_HUMAN
Q8TAL4_HUMAN
Q8N574_HUMAN
Q6NT96_HUMAN
Q53GN5_HUMAN
BAT5_HUMAN
ETS1_HUMAN
Q5T3J6_HUMAN
HS90A_HUMAN
SOX30_HUMAN
Q6DC98_HUMAN
Q2TB78_HUMAN
Q6IAC5_HUMAN
TOP1_HUMAN
Q53TI5_HUMAN
CRADD_HUMAN
Q5JQ13_HUMAN
LAM1_HUMAN
Q9BWP7_HUMAN
BCN1_HUMAN
RIPK2_HUMAN
Q6LCG1_HUMAN
CDC2_HUMAN
INSL6_HUMAN
HIPK3_HUMAN
LNX1_HUMAN
Q6B838_HUMAN
MCL1_HUMAN
Q8IYN1_HUMAN
Q5SQL3_HUMAN
RPB9_HUMAN
HIPK2_HUMAN
Q5VW83_HUMAN
Q4G0N5_HUMAN
PLK3_HUMAN
Q3SYD8_HUMAN
MMP7_HUMAN
Q5STB2_HUMAN
Q6P4C7_HUMAN
KPCZ_HUMAN
Q96L05_HUMAN
Q6LCB0_HUMAN
Q5T1L8_HUMAN
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