Extending signalling pathways with protein-interaction networks. Application to apoptosis.


Extending signalling pathways with protein-interaction networks. Application to apoptosis.
Joan Planas-Iglesias, Emre Guney, Javier Garcia-Garcia, Kevin A. Robertson, Sobia Raza, Tom C. Freeman, Peter Ghazal and Baldo Oliva.
OMICS. 2012 May;16(5):245-56. Epub 2012 Mar 2. (PMID: 22385281)

New candidates found in STRING+ network for ALD, FF, iALD combinated scoring methods

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Annotated function Keyword validation new candidates ProMiner validation new candidates
automated transcript 80 87
annotated by orthology 8 19
interacts with nucleic acid 11 14
signaling pathways 31 38
folding related 4 5
other 21 33
Total 155 196

Keyword validation new candidates ProMiner validation new candidates
CAC1H_HUMAN CAC1H_HUMAN
HSP7C_HUMAN HSP7C_HUMAN
CH60_HUMAN Q6FHL2_HUMAN
CIKS_HUMAN CIKS_HUMAN
PML_HUMAN MOAP1_HUMAN
NF2L2_HUMAN TF65_HUMAN
Q12844_HUMAN PML_HUMAN
Q7Z6Q2_HUMAN NF2L2_HUMAN
Q5T7S2_HUMAN TNR3_HUMAN
MK03_HUMAN FOXO3_HUMAN
Q502X2_HUMAN Q12844_HUMAN
TBK1_HUMAN Q7Z6Q2_HUMAN
1433S_HUMAN NOL3_HUMAN
AKT2_HUMAN Q5T7S2_HUMAN
Q8TBA7_HUMAN CH60_HUMAN
TNR8_HUMAN BMF_HUMAN
M3K1_HUMAN BIM_HUMAN
COMD1_HUMAN RAF1_HUMAN
Q3LRW3_HUMAN TBK1_HUMAN
Q71T04_HUMAN BIRC3_HUMAN
Q99618_HUMAN 1433S_HUMAN
Q9BZL0_HUMAN AKT2_HUMAN
Q9BWP7_HUMAN Q8TBA7_HUMAN
Q8IZ48_HUMAN TNR8_HUMAN
Q5CAQ6_HUMAN M3K1_HUMAN
PIN1_HUMAN COMD1_HUMAN
VDAC2_HUMAN Q7L7Q8_HUMAN
Q96IF6_HUMAN Q658U1_HUMAN
Q5BKZ4_HUMAN TNR6B_HUMAN
DVL2_HUMAN Q71T04_HUMAN
CABL2_HUMAN O75807_HUMAN
TOP2A_HUMAN Q99618_HUMAN
ANXA5_HUMAN Q5THJ6_HUMAN
Q9NYJ8_HUMAN Q9BWP7_HUMAN
Q12845_HUMAN Q8IZ48_HUMAN
Q8N634_HUMAN M3K2_HUMAN
Q53QD5_HUMAN BIRC2_HUMAN
Q96C41_HUMAN TNAP3_HUMAN
Q5R3A3_HUMAN Q5CAQ6_HUMAN
Q5VWK3_HUMAN BCLW_HUMAN
HS90A_HUMAN VDAC2_HUMAN
Q5T5T6_HUMAN Q96IF6_HUMAN
PPRB_HUMAN Q5BKZ4_HUMAN
PNPH_HUMAN DVL2_HUMAN
CBP_HUMAN CABL2_HUMAN
MP2K4_HUMAN CARD4_HUMAN
M3K3_HUMAN ANXA5_HUMAN
Q3LRW1_HUMAN KC1D_HUMAN
IF2B_HUMAN Q12845_HUMAN
Q4VY19_HUMAN Q5JUN9_HUMAN
Q3LRW2_HUMAN Q53QD5_HUMAN
Q5ZPJ1_HUMAN PSN1_HUMAN
Q8WXU1_HUMAN Q9BR32_HUMAN
Q5VWK1_HUMAN Q5R3A3_HUMAN
CDN1B_HUMAN Q5VWK3_HUMAN
Q5JZA5_HUMAN HIPK3_HUMAN
Q6Q322_HUMAN O75569_HUMAN
Q6IB40_HUMAN HS90A_HUMAN
P2AA_HUMAN KPCZ_HUMAN
HMG2_HUMAN Q5T5T6_HUMAN
NEMO_HUMAN PPRB_HUMAN
L1CAM_HUMAN Q6F4C0_HUMAN
Q5U007_HUMAN HIPK1_HUMAN
MK09_HUMAN CBP_HUMAN
CAN1_HUMAN M3K3_HUMAN
CYLD_HUMAN IF2B_HUMAN
Q6Y4Q7_HUMAN Q4VY19_HUMAN
MK01_HUMAN BBC3_HUMAN
IPYR_HUMAN SHLB1_HUMAN
Q7Z4M9_HUMAN PTN13_HUMAN
Q5U675_HUMAN TR10C_HUMAN
ADT1_HUMAN BIK_HUMAN
TNR4_HUMAN Q5VWK1_HUMAN
MYD88_HUMAN RBX2_HUMAN
Q5T1L8_HUMAN Q5JZA5_HUMAN
HIPK1_HUMAN Q6Q322_HUMAN
KC1D_HUMAN STK4_HUMAN
IKBB_HUMAN Q6IB40_HUMAN
Q8IY86_HUMAN P2AA_HUMAN
Q49AR7_HUMAN HMG2_HUMAN
TANK_HUMAN CD2A2_HUMAN
MK08_HUMAN NEMO_HUMAN
Q5T1L7_HUMAN L1CAM_HUMAN
EP300_HUMAN Q5U007_HUMAN
Q6JSD9_HUMAN BNIP1_HUMAN
Q6FH58_HUMAN CAN1_HUMAN
CRTAP_HUMAN CYLD_HUMAN
NRIP1_HUMAN B2L14_HUMAN
Q8WZ49_HUMAN Q6Y4Q7_HUMAN
BCN1_HUMAN MK01_HUMAN
Q6IQ37_HUMAN IPYR_HUMAN
K1C18_HUMAN Q7Z4M9_HUMAN
Q9BWK8_HUMAN PEA15_HUMAN
FLNA_HUMAN ADT1_HUMAN
RD23A_HUMAN BAG1_HUMAN
AIOL_HUMAN TOP2A_HUMAN
Q96IS6_HUMAN TNR4_HUMAN
HSPB1_HUMAN MYD88_HUMAN
Q5JSD1_HUMAN Q5T1L8_HUMAN
1433B_HUMAN Q96C25_HUMAN
M3K14_HUMAN Q9NYJ8_HUMAN
Q7Z6Q3_HUMAN IKBB_HUMAN
Q5ZPJ0_HUMAN BIRC5_HUMAN
NUCL_HUMAN Q8IY86_HUMAN
AP1_HUMAN Q49AR7_HUMAN
TOP2B_HUMAN TANK_HUMAN
CTNB1_HUMAN BAP31_HUMAN
Q99638_HUMAN Q5T1L7_HUMAN
Q5CAQ7_HUMAN EP300_HUMAN
DYNA_HUMAN BI1_HUMAN
Q96H53_HUMAN APR_HUMAN
Q96HX7_HUMAN CRTAP_HUMAN
CATG_HUMAN NRIP1_HUMAN
Q3LRW4_HUMAN HIPK2_HUMAN
MPRI_HUMAN Q8N634_HUMAN
IRAK1_HUMAN BCN1_HUMAN
TNR17_HUMAN Q6IQ37_HUMAN
Q2XSC7_HUMAN K1C18_HUMAN
IMA2_HUMAN DEDD_HUMAN
Q5STV3_HUMAN Q9BWK8_HUMAN
Q12843_HUMAN FLNA_HUMAN
ANTR1_HUMAN TNR7_HUMAN
M3K2_HUMAN AIOL_HUMAN
MX1_HUMAN Q96IS6_HUMAN
KPCZ_HUMAN BFL1_HUMAN
Q6DC98_HUMAN Q5JSD1_HUMAN
TOP1_HUMAN Q96C41_HUMAN
Q7Z6Q1_HUMAN PNPH_HUMAN
LAM1_HUMAN 1433B_HUMAN
Q6DHV4_HUMAN M3K14_HUMAN
Q9UHB7_HUMAN Q7Z6Q3_HUMAN
Q6IB95_HUMAN BNI3L_HUMAN
ABCA1_HUMAN NUCL_HUMAN
Q5JSD2_HUMAN AP1_HUMAN
PP1A_HUMAN TOP2B_HUMAN
Q6B838_HUMAN Q5FVE7_HUMAN
GSPT1_HUMAN CTNB1_HUMAN
1433E_HUMAN Q99638_HUMAN
PGH2_HUMAN Q5CAQ7_HUMAN
Q4VY20_HUMAN DYNA_HUMAN
Q4VJB6_HUMAN Q96H53_HUMAN
IKBE_HUMAN Q96HX7_HUMAN
P2BA_HUMAN CATG_HUMAN
Q53SE2_HUMAN Q5TZN6_HUMAN
Q15959_HUMAN MPRI_HUMAN
Q5STB2_HUMAN ERN1_HUMAN
TP4AP_HUMAN IRAK1_HUMAN
IRF4_HUMAN TNR17_HUMAN
GRP75_HUMAN PDCD6_HUMAN
IL1A_HUMAN IMA2_HUMAN
BCR_HUMAN Q5STV3_HUMAN
FSTL1_HUMAN Q12843_HUMAN
CDC2_HUMAN GRAB_HUMAN
TNR9_HUMAN Q9HB75_HUMAN
Q8NFL2_HUMAN ANTR1_HUMAN
DCC_HUMAN
BNIP3_HUMAN
MX1_HUMAN
PIN1_HUMAN
Q6DC98_HUMAN
Q9NRE6_HUMAN
TOP1_HUMAN
CRADD_HUMAN
Q7Z6Q1_HUMAN
LAM1_HUMAN
Q6DHV4_HUMAN
Q9UHB7_HUMAN
RIPK2_HUMAN
Q6IB95_HUMAN
ABCA1_HUMAN
Q6LCG1_HUMAN
Q6LCB0_HUMAN
Q5JSD2_HUMAN
PP1A_HUMAN
Q6B838_HUMAN
GSPT1_HUMAN
MCL1_HUMAN
RD23A_HUMAN
Q4VY20_HUMAN
HRK_HUMAN
IKBE_HUMAN
P2BA_HUMAN
Q53SE2_HUMAN
Q15959_HUMAN
Q5STB2_HUMAN
TP4AP_HUMAN
IRF4_HUMAN
FKBP8_HUMAN
BCR_HUMAN
FSTL1_HUMAN
BCL10_HUMAN
CDC2_HUMAN
GR65_HUMAN
TNR9_HUMAN
AATF_HUMAN
Q8NFL2_HUMAN
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