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Information on SUBCLASS 2.1.3
Subclass Accession number: 5323
Subclass: 2.1.3 PSSM
Type: HE alpha-beta
DB: ArchDB95

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 97

Average sequence ID (%) : 11.0 +/- 13.7
Average RMSD (Å) : 0.666 +/- 0.211

Consensus geometry
d (Å): 9 delta (°): 90-135 theta (°): 90-135 rho (°): 90-135
Consensus Sequence: XXcXXh
(φψ)-conformation: aalpbb
Pattern: [acfgilmpvwy]xxx[adegknqrs]xx[acfilmpvwy]xx
Conservation:-0.521-0.487-0.036-0.3492.271-0.771-0.4540.995-0.648-1.000
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a6q_*_1691a6q   -175183IQNAGGSVM.HHHTT--EE.aaaavxbbb.
1a8i_*_481a8i   -7483YYEKDPKRIYHHHH---EEEaaaalxpbbb
1a9x_A_1071a9x   A108115LEEFGVTM..HHHHT-EE..aaaavxxx..
1auv_A_1991auv   A205213LQYAGIPSI.HHHTT--EE.aaaavxwbb.
1b7g_O_381b7g   O4351AHRRGIRIY.HHHTT--EE.aaaavxxbb.
1bwv_S_231bwv   S3342MISKKLAIGIHHHTT-EEEEaaaalxxbbb
1chu_A_2231chu   A228236AWRAGCRVA.HHHTT--EE.aaaagxxbb.
1d1l_A_281d1l   A3342AIHAGRKIFLHHHTT--EEEaaaalxxbbb
1d4d_A_3431d4d   A348356ALQAGAATR.HHHTTB-EE.aaaavxxbb.
1dci_A_2181dci   A224232LTFTARKMM.HHHH--EEE.aaaalxxbx.
1dhs_*_2201dhs   -224232AQKNHIPVF.HHHTT--EE.aaaalbxbb.
1dq3_A_3791dq3   A379386WHTRNRVS..HHHHS-EE..aaaalbbx..
1e5k_A_1571e5k   A161170MRLAGGHAVDHHHTT-EEEEaaaavxbxbx
1e5x_A_3661e5x   A372381LKKCNGIVEEHHHTT--EEEaaaalxbbbb
1ei7_A_1411ei7   A145152ESSSGLVW..HHHH--EE..aaaavxxx..
1f0n_A_1971f0n   A200209LVANNTRLWVHHHTT-EEEEaaaalxxbbb
1f2v_A_601f2v   A6776ALKAGAPILCHHHTT--EEEaaaagpxbxb
1f83_A_3161f83   A324331KDKYKFVE..HHHTT-EE..aaaavxbb..
1f8r_A_961f8r   A102111IRKFDLRLNEHHHTT--EEEaaaalxbbbp
1ffv_C_1251ffv   C129138SIAVEAHFVLHHHTT-EEEEaaaavxbbxb
1fiq_B_3621fiq   B365374FMASGTKLTIHHHTT-EEEEaaaalxxbxx
1fnn_A_1081fnn   A119128LRERDLYMFLHHHTT--EEEaaaalbbbxx
1g6o_A_1571g6o   A167176GIAIGKNVIVHHHHT--EEEaaaavbxbbb
1gdh_A_1831gdh   A186193EASYQATF..HHHHT-EE..aaaalxxx..
1gu7_A_3081gu7   A311320YIFKNFTSAGHHHS--EEEEaaaalxbbbb
1h2b_A_2941h2b   A297306VISSEVSFEGHHHTT-EEEEaaaalxbbbx
1h7e_A_2031h7e   A205214LMNAGINIRTHHHTT--EEEaaaavxxbxb
1hkh_A_2091hkh   A215224VRAAGKPTLIHHHH---EEEaaaavxpbbb
1hnu_A_1711hnu   A177185CLMFNKPFK.HHHTT--EE.aaaalbxxx.
1hss_A_951hss   A96104TAVCRLPIV.HHHTT--EE.aaaalbxbb.
1huu_A_181huu   A3544ALRKGDKVQLHHHTT--EEEaaaavxbbbb
1hzd_A_2301hzd   A236244LIFSARVLD.HHHHT-EEE.aaaalxbxb.
1i7n_A_2001i7n   A206214MQYAGLPSI.HHHTT--EE.aaaavxxbb.
1iho_A_71iho   A1726LRMEGKRVALHHHTT--EEEaaaavxxbbb
1ii2_A_3921ii2   A403412MQKHNSRVWLHHHHT-EEEEaaaalxxbbb
1ii7_A_581ii7   A7180PKEHSIPVFAHHTTT--EEEaaaavxxbbb
1im5_A_301im5   A4049FKEKGALIVAHHHTT-EEEEaaaavxxbxb
1ipa_A_1761ipa   A183192IKQHNLPLVAHHHTT--EEEaaaalxpbbb
1j23_A_941j23   A105114TVDFGVPIIFHHTS---EEEaaaavbpbxx
1j3b_A_4031j3b   A414423IRKHAPRVYLHHHH--EEEEaaaalxxbbb
1j4a_A_861j4a   A8997AKELGFQIT.HHHTT-EEE.aaaavxbbb.
1j5u_A_261j5u   A3847LEEEGIVLDTHHHHT-EEEEaaaalxbxxa
1j6u_A_891j6u   A97106LKREKKEEFAHHHH---EEEaaaalbxbbb
1jeh_A_841jeh   A106114FKKNKVTYY.HHHHT-EEE.aaaalbxxx.
1jnr_A_2421jnr   A247255GLKAGAMLT.HHHHT--EE.aaaagxxxb.
1jvb_A_2811jvb   A284291ITLSEIQF..HHHHT-EE..aaaalxbb..
1jzt_A_1001jzt   A109117LNFFKVPVL.HHHTT--EE.aaaalxpbx.
1ka9_H_651ka9   H7180HLERGLPFLGHHHTT--EEEaaaavxpbbb
1kol_A_3231kol   A326335GWAKSHSFHTHHHTT-EEEEaaaalxbbbb
1kzy_C_18131kzy   C18181827CLASGIPCVSHHHHT--EEEaaaavxxxbx
1l0l_B_821l0l   B8998IEAVGGKLSVHHHTT-EEEEaaaavxbbbb
1l8a_A_7061l8a   A708717GIRKGIYKLEHHHHT-EEEEaaaagbbxab
1llu_A_2771llu   A280289VVLKGLHIAGHHHTT-EEEEaaaalxbbbx
1lwd_A_2361lwd   A239248FDKYKIWYEHHHHTT--EEEaaaalbbbbx
1n62_C_1251n62   C129138MQCLGAAYELHHHHT-EEEEaaaavxbxxb
1nki_A_711nki   A8190LRAHGVREWKHHHTT--EEEaaaavxxxab
1npb_A_741npb   A8493LEQAGVTIWKHHHTT--EEEaaaavxxxab
1ns5_A_811ns5   A91100WKLDGRDVSLHHHH-S-EEEaaaagxpbbb
1o89_A_2531o89   A255264FILRNVRLQGHHHH--EEEEaaaalxbbbx
1obb_A_3561obb   A362371ALLNDNKARFHHHH---EEEaaaalxxbxb
1oi4_A_1051oi4   A114123FVNSGKPVFAHHHTT--EEEaaaavxpbbb
1ols_A_1991ols   A208217AATLECPIIFHHHTT--EEEaaaalbxbbx
1p1j_A_761p1j   A8796ANKHNVEFQTHHHTT--EEEaaaalxxbxb
1p71_A_181p71   A3544AVSSGDKVTLHHHTT--EEEaaaavxxxbb
1p9b_A_2121p9b   A219228NLENNKKVLIHHHTT--EEEaaaalxxbbb
1pfk_A_401pfk   A4352GLYEDRMVQLHHHTT-EEEEaaaalbbbxb
1psw_A_2751psw   A276285AAALNRPLVAHHHTT--EEEaaaavxwbbb
1pvy_A_31pvy   A1019ALKKGEIILVHHHTT--EEEaaaavxxbbb
1pxv_A_3091pxv   A315324LTKDNVGIMIHHHTT--EEEaaaalbxbbx
1pzx_A_151pzx   A1826IREHRIAFL.HHHTT-EEE.aaaalxpbb.
1pzx_A_451pzx   A5160AMRQGHTVKTHHTTT---EEaaaavbbxbb
1q4t_A_301q4t   A3140DGTVGFVIDEHHHHT-EEEEaaaavxbxax
1q9i_A_3441q9i   A349357AENAGGALK.HHHTT--EE.aaaagxxbb.
1qba_*_2461qba   -256265FALLGVPVQTHHHTT--EEEaaaavbxxba
1qf5_A_2041qf5   A211220ARQRGDFVMFHHHHT--EEEaaaavxxbbb
1qo8_A_2481qo8   A260268AKEQGIDTR.HHHTT--EE.aaaavxxxx.
1qo8_A_3391qo8   A344352AKEIGASMT.HHHTTB-EE.aaaagxxbb.
1qus_A_2921qus   A295302LAAAGLTP..HHHTT-EE..aaaagbbx..
1r6d_A_1501r6d   A166175HRTYGLDVRIHHHH---EEEaaaavxxbbb
1r6t_A_1451r6t   A149158AYENKKPFYLHHHTT--EEEaaaavxwbbx
1r89_A_2641r89   A271280VEERGTAVFAHHHHT-EEEEaaaavxxbbb
1r9c_A_151r9c   A2332EGVFDAREVYHHHH--EEEEaaaalpbxab
1rjw_A_2711rjw   A274283TVLNGIKIIGHHHTT-EEEEaaaalxbbbb
1s3e_A_661s3e   A7281AKELGLETYKHHHTT--EEEaaaavxbbbx
1set_A_3551set   A357365ARRANLRYR.HHHHT-EEE.aaaavbbbb.
1t7p_A_391t7p   A4958EVARGGLIVFHHHTT--EEEaaaavxbbbb
1tki_A_1891tki   A190197EVHQHDVV..HHHTT-EE..aaaalbxb..
1ukf_A_2401ukf   A251260YNSLNYDVACHHHTT--EEEaaaavbpxab
1umd_A_1811umd   A190199AAVQGAPAVFHHHTT-SEEEaaaalxxbbx
1usu_A_4881usu   A491500LKAKNFEVLFHHHTT--EEEaaaavxxbxx
1v7c_A_2491v7c   A256265KEESGGVIEAHHHHT-EEEEaaaavxbbbb
1v9c_A_551v9c   A6271AIQAGARILVHHHTT--EEEaaaavpxbxb
1vic_A_2161vic   A218227VLYNGERIHVHHHTT--EEEaaaavxxbbb
1vj1_A_2711vj1   A277286RKERNITRERHHHTT-EEEEaaaalxxbbx
1vjt_A_3461vjt   A352361AIANNKRVRLHHHH---EEEaaaalxxbxb
2nac_A_1292nac   A132141AIDRNVTVAEHHHTT-EEEEaaaalxxbbb
2nac_A_2272nac   A230237EKELNLTW..HHHHT-EE..aaaalxbx..
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1d4d_A_3431d4d   A     FADFLAVIN-ADENINE DINUCLEOTIDE D - 343
1d4d_A_3431d4d   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 344
1d4d_A_3431d4d   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 347
1dci_A_2181dci   A     EDO1,2-ETHANEDIOL R - 218
1dci_A_2181dci   A     EDO1,2-ETHANEDIOL V - 221
1dci_A_2181dci   A     EDO1,2-ETHANEDIOL N - 222
1dci_A_2181dci   A     EDO1,2-ETHANEDIOL F - 226
1e5x_A_3661e5x   A     MSESELENOMETHIONINE A - 371
1e5x_A_3661e5x   A     MSESELENOMETHIONINE L - 372
1e5x_A_3661e5x   A     MSESELENOMETHIONINE C - 375
1e5x_A_3661e5x   A     MSESELENOMETHIONINE N - 376
1e5x_A_3661e5x   A     MSESELENOMETHIONINE G - 377
1e5x_A_3661e5x   A     MSESELENOMETHIONINE I - 378
1e5x_A_3661e5x   A     MSESELENOMETHIONINE V - 379
1f0n_A_1971f0n   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID N - 204
1f0n_A_1971f0n   A     MES2-(N-MORPHOLINO)-ETHANESULFONIC ACID R - 206
1f8r_A_961f8r   A     NAGN-ACETYL-D-GLUCOSAMINE N - 110
1ffv_C_1251ffv   C     FADFLAVIN-ADENINE DINUCLEOTIDE H - 125
1ffv_C_1251ffv   C     FADFLAVIN-ADENINE DINUCLEOTIDE P - 126
1fnn_A_1081fnn   A     MGMAGNESIUM ION D - 131
1fnn_A_1081fnn   A     ADPADENOSINE-5'-DIPHOSPHATE D - 131
1g6o_A_1571g6o   A     MSESELENOMETHIONINE A - 163
1g6o_A_1571g6o   A     MSESELENOMETHIONINE I - 164
1g6o_A_1571g6o   A     MSESELENOMETHIONINE G - 167
1g6o_A_1571g6o   A     MSESELENOMETHIONINE I - 168
1g6o_A_1571g6o   A     MSESELENOMETHIONINE K - 172
1g6o_A_1571g6o   A     MSESELENOMETHIONINE N - 173
1g6o_A_1571g6o   A     MSESELENOMETHIONINE V - 174
1g6o_A_1571g6o   A     MSESELENOMETHIONINE I - 175
1g6o_A_1571g6o   A     MSESELENOMETHIONINE V - 176
1g6o_A_1571g6o   A     ADPADENOSINE-5'-DIPHOSPHATE G - 178
1gu7_A_3081gu7   A     GOLGLYCEROL L - 310
1gu7_A_3081gu7   A     GOLGLYCEROL Y - 311
1gu7_A_3081gu7   A     GOLGLYCEROL I - 312
1gu7_A_3081gu7   A     GOLGLYCEROL F - 313
1gu7_A_3081gu7   A     GOLGLYCEROL K - 314
1gu7_A_3081gu7   A     GOLGLYCEROL N - 315
1gu7_A_3081gu7   A     GOLGLYCEROL F - 316
1gu7_A_3081gu7   A     GOLGLYCEROL A - 319
1gu7_A_3081gu7   A     GOLGLYCEROL G - 320
1iho_A_71iho   A     EDO1,2-ETHANEDIOL P - 28
1iho_A_71iho   A     EDO1,2-ETHANEDIOL T - 29
1im5_A_301im5   A     ZNZINC ION D - 52
1j3b_A_4031j3b   A     PO4PHOSPHATE ION E - 412
1j3b_A_4031j3b   A     PO4PHOSPHATE ION K - 413
1j3b_A_4031j3b   A     PO4PHOSPHATE ION K - 416
1j3b_A_4031j3b   A     PO4PHOSPHATE ION H - 417
1j5u_A_261j5u   A     MSESELENOMETHIONINE E - 51
1j5u_A_261j5u   A     CACALCIUM ION E - 51
1j6u_A_891j6u   A     MSESELENOMETHIONINE R - 89
1j6u_A_891j6u   A     MSESELENOMETHIONINE Y - 92
1jnr_A_2421jnr   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 242
1jnr_A_2421jnr   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 243
1jnr_A_2421jnr   A     FADFLAVIN-ADENINE DINUCLEOTIDE M - 246
1jvb_A_2811jvb   A     MSESELENOMETHIONINE F - 291
1jzt_A_1001jzt   A     MSESELENOMETHIONINE F - 101
1jzt_A_1001jzt   A     MSESELENOMETHIONINE Y - 102
1jzt_A_1001jzt   A     MSESELENOMETHIONINE L - 105
1llu_A_2771llu   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE V - 281
1llu_A_2771llu   A     EDO1,2-ETHANEDIOL L - 282
1n62_C_1251n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE M - 125
1n62_C_1251n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE L - 138
1nki_A_711nki   A     PPFPHOSPHONOFORMIC ACID K - 90
1ns5_A_811ns5   A     MSESELENOMETHIONINE L - 88
1ns5_A_811ns5   A     MSESELENOMETHIONINE W - 91
1ns5_A_811ns5   A     MSESELENOMETHIONINE K - 92
1ns5_A_811ns5   A     MSESELENOMETHIONINE G - 95
1ns5_A_811ns5   A     MSESELENOMETHIONINE R - 96
1ns5_A_811ns5   A     MSESELENOMETHIONINE D - 97
1ns5_A_811ns5   A     MSESELENOMETHIONINE V - 98
1ns5_A_811ns5   A     MSESELENOMETHIONINE L - 101
1ns5_A_811ns5   A     MSESELENOMETHIONINE I - 102
1obb_A_3561obb   A     CSWCYSTEINE-S-DIOXIDE H - 356
1obb_A_3561obb   A     CSWCYSTEINE-S-DIOXIDE V - 372
1obb_A_3561obb   A     CSWCYSTEINE-S-DIOXIDE N - 374
1ols_A_1991ols   A     MNMANGANESE (II) ION R - 220
1ols_A_1991ols   A     TDPTHIAMIN DIPHOSPHATE R - 220
1ols_A_1991ols   A     MNMANGANESE (II) ION N - 221
1p1j_A_761p1j   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE N - 76
1p1j_A_761p1j   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE N - 77
1p1j_A_761p1j   A     NAI1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE G - 78
1pfk_A_401pfk   A     ADPADENOSINE-5'-DIPHOSPHATE Y - 41
1psw_A_2751psw   A     MSESELENOMETHIONINE V - 275
1psw_A_2751psw   A     MSESELENOMETHIONINE A - 276
1psw_A_2751psw   A     MSESELENOMETHIONINE A - 277
1psw_A_2751psw   A     MSESELENOMETHIONINE A - 278
1psw_A_2751psw   A     MSESELENOMETHIONINE L - 283
1psw_A_2751psw   A     MSESELENOMETHIONINE A - 285
1psw_A_2751psw   A     MSESELENOMETHIONINE Y - 287
1pzx_A_451pzx   A     PLMPALMITIC ACID T - 60
1pzx_A_451pzx   A     PLMPALMITIC ACID A - 61
1q4t_A_301q4t   A     4CO4-HYDROXYPHENACYL COENZYME A D - 31
1q9i_A_3441q9i   A     FADFLAVIN-ADENINE DINUCLEOTIDE D - 344
1q9i_A_3441q9i   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 345
1q9i_A_3441q9i   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 348
1qo8_A_2481qo8   A     FADFLAVIN-ADENINE DINUCLEOTIDE S - 248
1qo8_A_2481qo8   A     HEMPROTOPORPHYRIN IX CONTAINING FE P - 250
1qo8_A_2481qo8   A     FADFLAVIN-ADENINE DINUCLEOTIDE I - 253
1qo8_A_3391qo8   A     FADFLAVIN-ADENINE DINUCLEOTIDE D - 339
1qo8_A_3391qo8   A     FADFLAVIN-ADENINE DINUCLEOTIDE G - 340
1qo8_A_3391qo8   A     FADFLAVIN-ADENINE DINUCLEOTIDE M - 343
1r6d_A_1501r6d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE Y - 151
1r6d_A_1501r6d   A     DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE Y - 151
1r6d_A_1501r6d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE K - 155
1r6d_A_1501r6d   A     DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE K - 155
1r6d_A_1501r6d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE R - 177
1r6d_A_1501r6d   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE C - 178
1r6d_A_1501r6d   A     DAU2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE C - 178
1r6t_A_1451r6t   A     MSESELENOMETHIONINE Q - 145
1r6t_A_1451r6t   A     MSESELENOMETHIONINE V - 146
1r6t_A_1451r6t   A     MSESELENOMETHIONINE L - 147
1r6t_A_1451r6t   A     MSESELENOMETHIONINE D - 148
1r6t_A_1451r6t   A     TYMTRYPTOPHANYL-5'AMP Y - 159
1r6t_A_1451r6t   A     TYMTRYPTOPHANYL-5'AMP T - 160
1rjw_A_2711rjw   A     ETFTRIFLUOROETHANOL L - 276
1umd_A_1811umd   A     MGMAGNESIUM ION E - 202
1umd_A_1811umd   A     TDPTHIAMIN DIPHOSPHATE E - 202
1umd_A_1811umd   A     MGMAGNESIUM ION N - 203
1vj1_A_2711vj1   A     MSESELENOMETHIONINE I - 276
1vj1_A_2711vj1   A     MSESELENOMETHIONINE R - 280
1vj1_A_2711vj1   A     MSESELENOMETHIONINE I - 282
1vj1_A_2711vj1   A     MSESELENOMETHIONINE T - 283
1vjt_A_3461vjt   A     MSESELENOMETHIONINE H - 346
1vjt_A_3461vjt   A     MSESELENOMETHIONINE I - 347
1vjt_A_3461vjt   A     MSESELENOMETHIONINE F - 349
1vjt_A_3461vjt   A     MSESELENOMETHIONINE I - 350
1vjt_A_3461vjt   A     MSESELENOMETHIONINE A - 354
1vjt_A_3461vjt   A     MSESELENOMETHIONINE N - 355
1vjt_A_3461vjt   A     MSESELENOMETHIONINE L - 363
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e5k_A_1571e5k   A CI1CITRIC ACID BINDING SITE FOR RESIDUE 302M - 158
1gu7_A_3081gu7   A BC3SO4 BINDING SITE FOR CHAIN AS - 309
1gu7_A_3081gu7   A AC6GOL BINDING SITE FOR CHAIN AK - 314
1h2b_A_2941h2b   A OC1SUBSTRATE BINDING SITE FOR CHAIN AS - 299
1ols_A_1991ols   A TDPTDP BINDING SITE FOR CHAIN AR - 220

Clusters included in this Subclass
CLUSTER: HE.1.15
CLUSTER: HE.2.149
CLUSTER: HE.2.8
CLUSTER: HE.3.105
CLUSTER: HE.3.111
CLUSTER: HE.3.7
CLUSTER: HE.4.11
CLUSTER: HE.4.324
CLUSTER: HE.4.67
CLUSTER: HE.5.153
CLUSTER: HE.5.19
CLUSTER: HE.5.200