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PDB code:

Information on SUBCLASS 4.1.3

Subclass Accession number: 7868 Subclass: 4.1.3 Type: HA beta-beta hairpin DB: ArchDB-EC Image coordinates: Consensus coordinates:

Number of loops: 91 Average sequence ID (%) : 15.4 +/- 17.1 Average RMSD (Å) : 0.381 +/- 0.163 Consensus geometry d (Å): 5 delta (°): 90-135 theta (°): 135-180 rho (°): 270-315

Loops included in this Subclass

Loop	PDB	Chain	Start	End	Sequence	Sec Struct	Ramachandran
1a4s_A_38	1a4s	A	40	49	VFEPATGRVL	EE-TTT--EE	bbbaaavxxa
1ak2_*_144	1ak2	-	144	153	LIHPQSGRSY	EE-TTT--EE	bbxaaavpbb
1aky_*_132	1aky	-	133	142	LIHPASGRSY	EE-TTT--EE	bbxaaNgpbb
1aor_A_77	1aor	A	81	90	TKSPLTGFIT	EE-TTTSSEE	bxxaaavbxb
1apy_A_64	1apy	A	68	77	IMDGTTMDVG	EE-TTT--EE	bbxaaavxbb
1ayx_*_457	1ayx	-	457	466	QLNRYTGYST	EE-TTT--EE	bbxaaavxpb
1b06_A_134	1b06	A	139	148	YYDNESGNLQ	EE-TTT--EE	xbxaaavxxx
1bd3_A_130	1bd3	A	136	145	QRDETTAEPK	EE-TTT--EE	bxpaaavxwb
1bj4_A_273	1bj4	A	275	284	SVDPATGKEI	EE-TTT--EE	bbxaaavxxx
1bqb_A_37	1bqb	A	41	50	NFNDQTGQAT	EE-TTT--EE	bxbaaavbbb
1bxs_A_36	1bxs	A	39	48	VFNPATEEKL	EE-TTT--EE	bbbaaavxxa
1c30_A_280	1c30	A	287	296	AVNPKNGRLI	EE-TTT--EE	bbxaaNvpbb
1c96_A_605	1c96	A	605	614	VRNAVTQEFG	EE-TTT--EE	bxxaaalbxb
1cpy_*_367	1cpy	-	369	378	WTASITDEVA	EE-TTT-SEE	bxxaaalbpa
1cru_A_370	1cru	A	373	382	VPSLKRGVIF	EEBSSS--EE	bxbaaavbbx
1cru_A_49	1cru	A	52	61	RVNPESGSVK	EE-TTT--EE	bbxaaavxbb
1dfx_*_6	1dfx	-	7	16	YKCTHCGNIV	EE-TTT--EE	bbxaaavxbb
1dp4_A_376	1dp4	A	380	389	DMDPETGAFR	EE-TTT--EE	bxxaaavxbb
1e4i_A_417	1e4i	A	418	427	HVDFRTQVRT	EE-TTT--EE	xbxaaavxxb
1e9y_B_536	1e9y	B	537	546	EVNPETYHVF	EE-TTT--EE	bbpaaalxbb
1ed8_A_88	1ed8	A	88	97	ALNKKTGKPD	EE-TTT--EE	bbxaaavxpb
1ejx_C_1534	1ejx	C	1535	1544	TVDAQTYEVR	EE-TTT--EE	bbxaaavxbb
1etr_H_198	1etr	H	201	210	MKSPYNNRWY	EE-TTTS-EE	bxxaaaUxxb
1euh_A_19	1euh	A	22	31	IYEPASGAEL	EE-TTT--EE	bbxaaavxxa
1eur_*_128	1eur	-	135	144	LVDRETGTIF	EE-TTT--EE	bbxaaavxbb
1ex4_A_71	1ex4	A	76	85	AVHVASGYIE	EE-TTT--EE	xbxaaagpxb
1flg_A_159	1flg	A	161	170	VKDGKTGKVL	EE-TTT--EE	bbxaaavxxb
1flg_A_185	1flg	A	188	197	ARDPDTGEEI	EE-TTT--EE	bbxaaavppa
1flg_A_292	1flg	A	295	304	GVDPSSGEVK	EE-TTT--EE	bbxaaavxxa
1flg_A_418	1flg	A	418	427	AYSQDTGLFY	EE-TTT--EE	bbbaaavbxb
1flg_A_466	1flg	A	470	479	AMDPVSGKVV	EE-TTT--EE	xxxaaavxxa
1fo3_A_442	1fo3	A	442	451	FINTHSGLFT	EE-TTT--EE	bbxaaavbxb
1fot_A_100	1fot	A	104	113	IRSRHNGRYY	EEETTT--EE	bbxaaalxbb
1fs7_A_263	1fs7	A	263	272	WTHGISKTPM	EE-TTT--EE	bxpaaalxxx
1fx4_A_1019	1fx4	A	1021	1030	RYDEVTKGYD	EE-TTT--EE	bbbaaavxbb
1fy7_A_194	1fy7	A	196	205	YIDDFTLQYF	EE-TTT--EE	xbxaaavxbb
1g72_A_444	1g72	A	448	457	AFDLTTGKAK	EE-TTT--EE	xbxaaavxxa
1g8k_B_75	1g8k	B	76	85	FSCPCHFTEF	EE-TTT--EE	bbbaaavxbb
1gai_*_401	1gai	-	401	410	QFDKSDGDEL	EE-TTT--EE	bbpaaavxxb
1ghs_A_193	1ghs	A	193	202	VRDQNNGLTY	EE-TTT--EE	bbxaaavxbb
1gof_*_173	1gof	-	175	184	AIEPTSGRVL	EE-TTT--EE	bxxaaavxxx
1gof_*_202	1gof	-	206	215	SWDPSTGIVS	EE-TTT--EE	bbbaaavxbb
1gte_A_971	1gte	A	972	981	QFDPETHLPT	EE-TTT--EE	xbxaaalbxb
1gu6_A_250	1gu6	A	250	259	WTNSLSKTPM	EE-TTT--EE	bbxaaavxxx
1gy9_A_189	1gy9	A	190	199	RTHPVSGKQA	EE-TTT--EE	bxxaaavxxb
1h0h_A_25	1h0h	A	29	38	HTDKKTNRAI	EE-TTT--EE	bbxaaavbxa
1h4i_A_453	1h4i	A	457	466	AYNAITGDYK	EE-TTT--EE	bbbaaavxba
1h6l_A_161	1h6l	A	164	173	YHSQKTGKYY	EE-TTT--EE	bbxaaavxbb
1hbn_C_175	1hbn	C	176	185	IYNKDTGRVE	EE-TTT--EE	bxbaaavbbb
1i40_A_28	1i40	A	31	40	EIDKESGALF	EE-TTT--EE	bxxaaavxxb
1irx_A_173	1irx	A	175	184	VYCPEHRREA	EE-TTT--EE	bbpaaNlbxb
1itv_A_57	1itv	A	59	68	FEEPLSKKLF	EE-TTT--EE	bxxaaavxbb
1jwk_A_79	1jwk	A	81	90	IKNWGSGEIL	EEBTTT--EE	bbbaaavpbb
1k2x_A_82	1k2x	A	86	95	VMDGNTLKAG	EE-TTT--EE	bbxaaavxbb
1k32_A_292	1k32	A	295	304	IFNPDTEKIE	EE-TTT--EE	bbxaaavxbb
1k3b_C_384	1k3b	C	389	398	GTDSASGMDY	EE-TTT--EE	bbxaaavxxb
1k4g_A_122	1k4g	A	124	133	FKSHLDGSRH	EE-TTT--EE	bbxaaavxbb
1k4t_A_414	1k4t	A	416	425	WTENIQGSIK	EE-TTT--EE	bxxaaavxxb
1k8t_A_645	1k8t	A	645	654	WTDPITKAKI	EE-TTT--EE	bbxaaavxbb
1kb0_A_284	1kb0	A	287	296	ALDPDTGKYK	EE-TTT--EE	bbxaaavxpa
1lgp_A_61	1lgp	A	64	73	VVDEKSGQVT	EE-TTT--EE	bbxaaavxxb
1lln_A_60	1lln	A	62	71	AIRRGNLYLE	EE-TTT--EE	xbxaaalxxa
1m6b_A_244	1m6b	A	245	254	VYNKLTFQLE	EE-TTTSSEE	bxbaaavbbb
1msw_D_710	1msw	D	710	719	VKDKKTGEIL	EE-TTT--EE	xbxaaavxxa
1mty_D_416	1mty	D	416	425	YIDRVSQVPF	EE-TTT--EE	bbxaaavxwb
1n8z_C_250	1n8z	C	251	260	TYNTDTFESM	EE-TTT--EE	bbxaaavxxb
1na7_A_97	1na7	A	101	110	VKDPVSRTPA	EE-TTT-SEE	bxxaaavxxb
1nhp_*_285	1nhp	-	285	294	IKYNPADTEV	EEEGGGTEEE	bxbaaalbbb
1nth_A_428	1nth	A	428	436	CYDVKTVTP.	HEETTTTEE.	abxaaalbx.
1o5o_A_99	1o5o	A	103	112	YRDPETLQAV	EE-TTT--EE	bxpaaalxxb
1o7d_D_612	1o7d	D	615	624	RFDPNTGLLM	EE-TTT-SEE	bbxaaavxpa
1ois_*_346	1ois	-	348	357	WRENIFNSFK	EE-TTT--EE	bbxaaavxxb
1om4_A_301	1om4	A	303	312	VKNWETDVVL	EEBTTT--EE	bbbaaavpbb
1p42_A_11	1p42	A	15	24	GVGIHTGEYS	EE-TTT--EE	exxaaavxxb
1pb1_A_264	1pb1	A	266	275	VKNPNTGKEI	EE-TTT--EE	bxxaaavxxx
1pfq_A_322	1pfq	A	329	338	DYDESSGRWN	EE-TTT--EE	bxbaaavxbb
1poi_B_196	1poi	B	199	208	KFDEKTKRMY	EE-TTT--EE	bbpaaavxxb
1q16_B_201	1q16	B	202	211	YKREEDGIVL	EE-TTT--EE	bbxaaavxxb
1qdb_A_268	1qdb	A	268	277	WTHNISKTPM	EE-TTT--EE	bbpaaavxxx
1qks_A_286	1qks	A	286	295	GMTYDEQEYH	EE-TTT--EE	exxaaalbxb
1rfn_B_98	1rfn	B	99	108	CKNSADNKVV	EEE-TTS-EE	bbbaaalxxx
1rfs_*_122	1rfs	-	123	132	FICPCHGSQY	EE-TTT--EE	xbxaaavpbb
1ryp_J_96	1ryp	J	102	111	GINSKSGKPF	EE-TTT--EE	ebxaaavxwb
1sss_A_134	1sss	A	139	148	YYDTESGNLQ	EE-TTT--EE	xbxaaavxxx
1xo1_A_164	1xo1	A	166	175	RFSFTTRREY	EE-TTT--EE	bbbaaavxbb
2occ_F_80	2occ	F	80	89	QRCPSCGTHY	EE-TTT--EE	bbxaaavpxb
3pmg_A_475	3pmg	A	475	484	YHDPVDGSVS	EE-TTT--EE	bbxaaavxbb
3tgl_*_50	3tgl	-	55	64	WSTLIYDTNA	EE-SSS--EE	bbxaaalxbb
4nos_A_85	4nos	A	87	96	IKNWGSGMTF	EEBTTT--EE	bbbaaavxbb
4ubp_C_538	4ubp	C	538	547	DINPETYEVK	EE-TTT--EE	bbxaaavxbb
7aat_A_161	7aat	A	161	168	.YDPKTCSL.	.EETTTTEE.	.xbaaalbx.

PDB ligands within a cut-off distance of 6 Å in this subclass

Loop	PDB	Chain	Ligands	Residue
1aky_*_132	1aky	*	AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE	R - 132
1aky_*_132	1aky	*	IMDIMIDAZOLE	R - 132
1aky_*_132	1aky	*	AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE	L - 133
1aky_*_132	1aky	*	AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE	I - 134
1aky_*_132	1aky	*	IMDIMIDAZOLE	G - 139
1aky_*_132	1aky	*	AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE	S - 141
1aky_*_132	1aky	*	AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE	Y - 142
1aky_*_132	1aky	*	AP5BIS(ADENOSINE)-5'-PENTAPHOSPHATE	H - 143
1aor_A_77	1aor	A	PTETUNGSTOPTERIN COFACTOR	N - 78
1aor_A_77	1aor	A	PTETUNGSTOPTERIN COFACTOR	M - 91
1aor_A_77	1aor	A	PTETUNGSTOPTERIN COFACTOR	A - 92
1aor_A_77	1aor	A	PTETUNGSTOPTERIN COFACTOR	N - 93
1aor_A_77	1aor	A	PTETUNGSTOPTERIN COFACTOR	S - 94
1b06_A_134	1b06	A	OF1FERROUS ION, 1 WATER COORDINATED	G - 134
1b06_A_134	1b06	A	OF1FERROUS ION, 1 WATER COORDINATED	W - 135
1bd3_A_130	1bd3	A	PO4PHOSPHATE ION	R - 137
1c30_A_280	1c30	A	MNMANGANESE (II) ION	N - 283
1c30_A_280	1c30	A	PIHYDROGENPHOSPHATE ION	N - 283
1c30_A_280	1c30	A	MNMANGANESE (II) ION	Q - 285
1c30_A_280	1c30	A	ADPADENOSINE-5'-DIPHOSPHATE	Q - 285
1c30_A_280	1c30	A	PIHYDROGENPHOSPHATE ION	Q - 285
1c30_A_280	1c30	A	ADPADENOSINE-5'-DIPHOSPHATE	I - 298
1c30_A_280	1c30	A	MNMANGANESE (II) ION	E - 299
1c30_A_280	1c30	A	ADPADENOSINE-5'-DIPHOSPHATE	E - 299
1c30_A_280	1c30	A	PIHYDROGENPHOSPHATE ION	E - 299
1c30_A_280	1c30	A	MNMANGANESE (II) ION	M - 300
1c30_A_280	1c30	A	MNMANGANESE (II) ION	N - 301
1c30_A_280	1c30	A	ADPADENOSINE-5'-DIPHOSPHATE	N - 301
1c30_A_280	1c30	A	PIHYDROGENPHOSPHATE ION	N - 301
1cpy_*_367	1cpy	*	NAGN-ACETYL-D-GLUCOSAMINE	N - 368
1cpy_*_367	1cpy	*	NAGN-ACETYL-D-GLUCOSAMINE	V - 377
1cru_A_49	1cru	A	GOLGLYCEROL	R - 52
1cru_A_49	1cru	A	GOLGLYCEROL	V - 53
1cru_A_49	1cru	A	GOLGLYCEROL	N - 54
1cru_A_49	1cru	A	GOLGLYCEROL	S - 57
1cru_A_49	1cru	A	GOLGLYCEROL	S - 59
1cru_A_49	1cru	A	GOLGLYCEROL	V - 60
1cru_A_49	1cru	A	GOLGLYCEROL	K - 61
1cru_A_370	1cru	A	PQQPYRROLOQUINOLINE QUINONE	L - 376
1cru_A_370	1cru	A	PQQPYRROLOQUINOLINE QUINONE	K - 377
1dfx_*_6	1dfx	*	FEFE (III) ION	C - 9
1dfx_*_6	1dfx	*	FEFE (III) ION	T - 10
1dfx_*_6	1dfx	*	FEFE (III) ION	H - 11
1dfx_*_6	1dfx	*	FEFE (III) ION	C - 12
1dfx_*_6	1dfx	*	FEFE (III) ION	G - 13
1dfx_*_6	1dfx	*	FEFE (III) ION	N - 14
1dfx_*_6	1dfx	*	CACALCIUM ION	E - 17
1g8k_B_75	1g8k	B	OC6CALCIUM ION, 6 WATERS COORDINATED	T - 75
1g8k_B_75	1g8k	B	OC6CALCIUM ION, 6 WATERS COORDINATED	S - 77
1g8k_B_75	1g8k	B	FESFE2/S2 (INORGANIC) CLUSTER	C - 78
1g8k_B_75	1g8k	B	FESFE2/S2 (INORGANIC) CLUSTER	P - 79
1g8k_B_75	1g8k	B	FESFE2/S2 (INORGANIC) CLUSTER	C - 80
1g8k_B_75	1g8k	B	FESFE2/S2 (INORGANIC) CLUSTER	H - 81
1g8k_B_75	1g8k	B	HGMERCURY (II) ION	F - 82
1g8k_B_75	1g8k	B	FESFE2/S2 (INORGANIC) CLUSTER	F - 82
1g8k_B_75	1g8k	B	FESFE2/S2 (INORGANIC) CLUSTER	T - 83
1g8k_B_75	1g8k	B	OC6CALCIUM ION, 6 WATERS COORDINATED	E - 84
1g8k_B_75	1g8k	B	FESFE2/S2 (INORGANIC) CLUSTER	F - 85
1gai_*_401	1gai	*	GACDIHYDRO-ACARBOSE	Q - 401
1gai_*_401	1gai	*	GLCGLUCOSE	E - 409
1gai_*_401	1gai	*	GLCGLUCOSE	L - 410
1gte_A_971	1gte	A	FS4IRON/SULFUR CLUSTER	I - 971
1gte_A_971	1gte	A	FS4IRON/SULFUR CLUSTER	F - 973
1gte_A_971	1gte	A	FS4IRON/SULFUR CLUSTER	H - 978
1gte_A_971	1gte	A	FS4IRON/SULFUR CLUSTER	P - 980
1gte_A_971	1gte	A	FS4IRON/SULFUR CLUSTER	V - 982
1h0h_A_25	1h0h	A	SSULFUR ATOM	L - 26
1h0h_A_25	1h0h	A	FS4IRON/SULFUR CLUSTER	L - 26
1h6l_A_161	1h6l	A	CACALCIUM ION	F - 161
1i40_A_28	1i40	A	CACALCIUM ION	E - 31
1irx_A_173	1irx	A	ZNZINC ION	C - 177
1irx_A_173	1irx	A	ZNZINC ION	E - 179
1irx_A_173	1irx	A	ZNZINC ION	H - 180
1k4t_A_414	1k4t	A	TTC(S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3, 14(4H,12H)-DIONE	Y - 426
1k4t_A_414	1k4t	A	TTG2-(1-DIMETHYLAMINOMETHYL-2-HYDROXY-8-HYDROXYMETHYL-9-OXO-9,11-DIHYDRO-INDOLIZINO[1,2-B]QUINOLIN-7-YL)-2-HYDROXY-BUTYRIC ACID	Y - 426
1lln_A_60	1lln	A	MLYN-DIMETHYL-LYSINE	I - 63
1lln_A_60	1lln	A	MLYN-DIMETHYL-LYSINE	R - 64
1lln_A_60	1lln	A	MLYN-DIMETHYL-LYSINE	R - 65
1lln_A_60	1lln	A	MLYN-DIMETHYL-LYSINE	G - 66
1lln_A_60	1lln	A	MLYN-DIMETHYL-LYSINE	Y - 69
1lln_A_60	1lln	A	MLYN-DIMETHYL-LYSINE	L - 70
1lln_A_60	1lln	A	MLYN-DIMETHYL-LYSINE	E - 71
1o5o_A_99	1o5o	A	U5PURIDINE-5'-MONOPHOSPHATE	I - 102
1o5o_A_99	1o5o	A	U5PURIDINE-5'-MONOPHOSPHATE	Y - 103
1o5o_A_99	1o5o	A	U5PURIDINE-5'-MONOPHOSPHATE	R - 104
1o5o_A_99	1o5o	A	U5PURIDINE-5'-MONOPHOSPHATE	L - 109
1o5o_A_99	1o5o	A	U5PURIDINE-5'-MONOPHOSPHATE	A - 111
1om4_A_301	1om4	A	BH4(6R,1'R,2'S)-5,6,7,8 TETRAHYDROBIOPTERIN	K - 304
1om4_A_301	1om4	A	BH4(6R,1'R,2'S)-5,6,7,8 TETRAHYDROBIOPTERIN	W - 306
1p42_A_11	1p42	A	MYRMYRISTIC ACID	I - 18
1p42_A_11	1p42	A	MYRMYRISTIC ACID	H - 19
1pb1_A_264	1pb1	A	GOLGLYCEROL	L - 264
1rfs_*_122	1rfs	*	FESFE2/S2 (INORGANIC) CLUSTER	C - 125
1rfs_*_122	1rfs	*	FESFE2/S2 (INORGANIC) CLUSTER	P - 126
1rfs_*_122	1rfs	*	FESFE2/S2 (INORGANIC) CLUSTER	C - 127
1rfs_*_122	1rfs	*	FESFE2/S2 (INORGANIC) CLUSTER	H - 128
1rfs_*_122	1rfs	*	FESFE2/S2 (INORGANIC) CLUSTER	G - 129
1rfs_*_122	1rfs	*	FESFE2/S2 (INORGANIC) CLUSTER	S - 130
1rfs_*_122	1rfs	*	FESFE2/S2 (INORGANIC) CLUSTER	Y - 132
2occ_F_80	2occ	F	ZNZINC ION	C - 82
2occ_F_80	2occ	F	ZNZINC ION	P - 83
2occ_F_80	2occ	F	ZNZINC ION	S - 84
2occ_F_80	2occ	F	ZNZINC ION	C - 85
2occ_F_80	2occ	F	ZNZINC ION	G - 86
2occ_F_80	2occ	F	ZNZINC ION	T - 87
2occ_F_80	2occ	F	ZNZINC ION	Y - 89
4nos_A_85	4nos	A	BH4(6R,1'R,2'S)-5,6,7,8 TETRAHYDROBIOPTERIN	K - 88
4nos_A_85	4nos	A	BH4(6R,1'R,2'S)-5,6,7,8 TETRAHYDROBIOPTERIN	W - 90

PDB Site Annotated loops in this subclass

Loop	PDB	Chain	Site	Residue
1eur_*_128	1eur	*	ACTACTIVE SITE.	D - 131
1eur_*_128	1eur	*	ACTACTIVE SITE.	V - 148
1rfs_*_122	1rfs	*	FSBIRON-SULFUR BINDING SITE.	C - 125
1rfs_*_122	1rfs	*	FSBIRON-SULFUR BINDING SITE.	H - 128

Clusters included in this Subclass

CLUSTER: HA.5.32

CLUSTER: HA.6.2

CLUSTER: HA.7.0

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