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Information on SUBCLASS 1.1.2
Subclass Accession number: 2026
Subclass: 1.1.2 PSSM
Type: HH alpha-alpha
DB: ArchDB40

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 76

Average sequence ID (%) : 10.4 +/- 13.2
Average RMSD (Å) : 0.539 +/- 0.185

Consensus geometry
d (Å): 7 delta (°): 0-45 theta (°): 45-90 rho (°): 135-180
Consensus Sequence: XXpXX
(φψ)-conformation: aapaa
Pattern: xx[acfiklmtv]x[adegknqrst][cdehnqrsty][deknprst]xxx
Conservation:-0.322-1.1031.219-0.9980.4721.8630.657-0.559-0.569-0.662
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a9x_A_1201a9x   A123132IDKAEDRRRFHHHHHSHHHHaaaaaxaaaa
1ajs_A_3011ajs   A307316ARTLSDPELFHHHHHSHHHHaaaaabaaaa
1aw9_*_1891aw9   -196205EAIVARPAFQHHHHHSHHHHaaaaapaaaa
1bpy_A_831bpy   A8695EKIRQDDTSSHHHHH-HHHHaaaaaxaaaa
1bs0_A_2491bs0   A254263YLLQFARHLIHHHHH-HHHHaaaaaxaaaa
1c3c_A_3891c3c   A391400EYLLEDEEVKHHHHT-HHHHaaaaaxaaaa
1cip_A_1211cip   A128137KRLWKDSGVQHHHHH-HHHHaaaaaxaaaa
1d2t_A_1911d2t   A206215ATLHTNPAFQHHHHT-HHHHaaaaaxaaaa
1d3y_A_3171d3y   A317326DFVRSFPEWQHHHHT-HHHHaaaaabaaaa
1dmt_A_7141dmt   A720729GTLQNSAEFSHHHHT-HHHHaaaaabaaaa
1dv1_A_1071dv1   A110119IRLMGDKVSAHHHHHSHHHHaaaaabaaaa
1e4e_A_1241e4e   A127136SAICMDKSLTHHHHHSHHHHaaaaaxaaaa
1eb6_A_1561eb6   A157166QDALNNADSYHHHHTBHHHHaaaaabaaaa
1eem_A_1971eem   A204213AAMKEDPTVSHHHHT-HHHHaaaaaxaaaa
1ehi_A_1271ehi   A130139HAVSFDKALTHHHHHSHHHHaaaaaxaaaa
1ekm_A_1241ekm   A126135EVIRNDPAVIHHHHT-HHHHaaaaaxaaaa
1ew6_A_431ew6   A4453QELKSMAKFGHHHHH-HHHHaaaaaxaaaa
1ewq_A_1821ewq   A182191PELLENGAFLHHHHH-HHHHaaaaaxaaaa
1eyh_A_1201eyh   A131140VALLRDEDRLHHHHH-HHHHaaaaaxaaaa
1eyq_A_711eyq   A7281EELLETLDFYHHHHT-HHHHaaaaabaaaa
1ezv_F_51ezv   F1322DYILKSPVLSHHHHHSHHHHaaaaaxaaaa
1f0l_A_2911f0l   A291300SETADNLEKTHHHHT-HHHHaaaaabaaaa
1fpo_A_411fpo   A5867WQTLRHPLMRHHHHHSHHHHaaaaaxaaaa
1g4i_A_401g4i   A5362KQAKKLDSCKHHHHH-HHHHaaaaaxaaaa
1gee_A_1971gee   A197206AEKFADPEQRHHHHHSHHHHaaaaaxaaaa
1gpu_A_1571gpu   A157166DGCLQEGISSHHHHHSHHHHaaaaaxaaaa
1gux_A_4731gux   A474483SKLLNDNIFHHHHHH-HHHHaaaaaxaaaa
1gwc_A_1901gwc   A197206ERFIELDAAKHHHHHSHHHHaaaaapaaaa
1hkk_A_1041hkk   A107116TDMVATANNRHHHHTSHHHHaaaaabaaaa
1hwl_A_5991hwl   A606615KAWLETSEGFHHHHTSHHHHaaaaaxaaaa
1hzt_A_1601hzt   A163172VMQATNREARHHHHHSHHHHaaaaaxaaaa
1inp_*_41inp   -2029RACRQQETLFHHHHHSHHHHaaaaaxaaaa
1itz_A_1681itz   A168177DGCQMEGIANHHHHHSHHHHaaaaaxaaaa
1iv8_A_5291iv8   A540549EETFTNKDFIHHHHH-HHHHaaaaaxaaaa
1j8u_A_3451j8u   A345354AGLLSSFGELHHHHT-HHHHaaaaabaaaa
1jdh_A_1821jdh   A186195HAIMRSPQMVHHHHT-HHHHaaaaabaaaa
1jdr_A_2331jdr   A236245YSLIQDPKYLHHHHHSHHHHaaaaaxaaaa
1ji2_A_4811ji2   A492501RLRHRLASLTHHHHH-HHHHaaaaabaaaa
1kek_A_11241kek   A11261135EFLMAQNRFAHHHHTBHHHHaaaaabaaaa
1kjq_A_1051kjq   A108117TKLTMNREGIHHHHHSHHHHaaaaabaaaa
1kl1_A_2601kl1   A270279FGEALQDDFKHHHHHSHHHHaaaaaxaaaa
1ku0_A_2401ku0   A240249ARYDLSVPGAHHHHHSHHHHaaaaaxaaaa
1l9x_A_1771l9x   A178187KNFTMNEKLKHHHHT-HHHHaaaaabaaaa
1lm4_A_281lm4   A4150LVNSQDEEIAHHHHHSHHHHaaaaaxaaaa
1ln1_A_651ln1   A6978ADIYMDSDYRHHHHH-HHHHaaaaaxaaaa
1lri_A_441lri   A4857KLMCASTACNHHHHH-HHHHaaaaaxaaaa
1ltz_A_1991ltz   A199208AGILSSKSESHHHHT-HHHHaaaaabaaaa
1m7y_A_3071m7y   A314323SAMLSDKKLTHHHHH-HHHHaaaaaxaaaa
1n1b_A_1231n1b   A132141VIYNEHKCFHHHHHH-HHHHaaaaabaaaa
1n2a_A_1761n2a   A183192QRMAERPEVQHHHHTSHHHHaaaaaxaaaa
1n62_C_781n62   C7988HALIGSDFLAHHHHH-HHHHaaaaaxaaaa
1n81_A_621n81   A6473NYALKDRVSIHHHHT-HHHHaaaaaxaaaa
1n8v_A_131n8v   A1423DEILANKRLLHHHHT-HHHHaaaaabaaaa
1nd6_A_1301nd6   A137146SETLKSEEFQHHHHH-HHHHaaaaaxaaaa
1ngk_A_121ngk   A2433AQVAEDEVLRHHHHH-HHHHaaaaaxaaaa
1nij_A_1041nij   A109118QTFFSHEVLCHHHHHSHHHHaaaaaxaaaa
1nof_A_2121nof   A212221DPVLKDSDASHHHHT-HHHHaaaaabaaaa
1oac_A_1891oac   A197206NIINNSEEFAHHHHT-HHHHaaaaabaaaa
1ogl_A_1901ogl   A201210NQIRQLKGYKHHHHHSHHHHaaaaaxaaaa
1or7_C_171or7   C2130NELAHNPEMQHHHHT-HHHHaaaaabaaaa
1ov9_A_41ov9   A413TKTLLNIRSLHHHHT-HHHHaaaaabaaaa
1p3w_A_3631p3w   A379388RLRDLSPLWEHHHHS-HHHHaaaaabaaaa
1pdu_A_4741pdu   A490499DHVTYNAEAQHHHHH-HHHHaaaaaxaaaa
1pmi_*_1551pmi   -160169KTLATVPELNHHHHH-HHHHaaaaabaaaa
1pot_*_2681pot   -275284INFLLRPDVAHHHHHSHHHHaaaaaxaaaa
1qis_A_3001qis   A307316ATILSNDALRHHHHH-HHHHaaaaabaaaa
1qop_B_221qop   B3342VSAQKDPEFQHHHHT-HHHHaaaaaxaaaa
1r6f_A_2041r6f   A205214EIFKASAEYKHHHHTSHHHHaaaaaxaaaa
1rjd_A_1301rjd   A138147SILRESEILRHHHHHSHHHHaaaaaxaaaa
1uc8_A_801uc8   A8392IEACGDKWATHHHHHBHHHHaaaaabaaaa
1usp_A_1161usp   A116125AAHEVCPYSAHHHHH-HHHHaaaaapaaaa
1uvq_B_551uvq   B5968EYWNSQKEVLHHHHT-HHHHaaaaaxaaaa
1v4v_A_3211v4v   A329338KGLLENPEELHHHHT-HHHHaaaaabaaaa
2cb5_A_82cb5   A1625QKLNSDPQFVHHHHT-HHHHaaaaaxaaaa
2fok_A_1462fok   A154163EAISSYPPAIHHHHT-HHHHaaaaabaaaa
3gcb_*_73gcb   -1524KEFQSDLTHQHHHHTSHHHHaaaaaxaaaa
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1a9x_A_1201a9x   A     MNMANGANESE (II) ION E - 127
1a9x_A_1201a9x   A     ADPADENOSINE-5'-DIPHOSPHATE R - 129
1a9x_A_1201a9x   A     MNMANGANESE (II) ION R - 129
1aw9_*_1891aw9   *     CDCADMIUM ION H - 190
1dmt_A_7141dmt   A     ZNZINC ION R - 717
1dmt_A_7141dmt   A     RDFN-ALPHA-L-RHAMNOPYRANOSYLOXY(HYDROXYPHOSPHINYL)-L-LEUCYL-L-TRYPTOPHAN R - 717
1e4e_A_1241e4e   A     ADPADENOSINE-5'-DIPHOSPHATE K - 133
1e4e_A_1241e4e   A     MGMAGNESIUM ION K - 133
1e4e_A_1241e4e   A     ADPADENOSINE-5'-DIPHOSPHATE Y - 137
1eb6_A_1561eb6   A     ZNZINC ION A - 163
1eb6_A_1561eb6   A     ZNZINC ION D - 164
1eb6_A_1561eb6   A     EDO1,2-ETHANEDIOL D - 164
1eb6_A_1561eb6   A     EDO1,2-ETHANEDIOL A - 167
1eb6_A_1561eb6   A     EDO1,2-ETHANEDIOL L - 168
1eb6_A_1561eb6   A     EDO1,2-ETHANEDIOL A - 170
1eb6_A_1561eb6   A     EDO1,2-ETHANEDIOL N - 171
1eb6_A_1561eb6   A     EDO1,2-ETHANEDIOL A - 172
1eb6_A_1561eb6   A     EDO1,2-ETHANEDIOL E - 174
1eb6_A_1561eb6   A     EDO1,2-ETHANEDIOL L - 175
1ehi_A_1271ehi   A     MGMAGNESIUM ION K - 136
1ehi_A_1271ehi   A     ADPADENOSINE-5'-DIPHOSPHATE K - 136
1ew6_A_431ew6   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 54
1ew6_A_431ew6   A     HEMPROTOPORPHYRIN IX CONTAINING FE H - 55
1ew6_A_431ew6   A     HEMPROTOPORPHYRIN IX CONTAINING FE K - 58
1ew6_A_431ew6   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 59
1ew6_A_431ew6   A     HEMPROTOPORPHYRIN IX CONTAINING FE F - 60
1ew6_A_431ew6   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 62
1ew6_A_431ew6   A     HEMPROTOPORPHYRIN IX CONTAINING FE M - 63
1ew6_A_431ew6   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 66
1eyq_A_711eyq   A     SULSULFATE ANION E - 76
1eyq_A_711eyq   A     SULSULFATE ANION L - 78
1eyq_A_711eyq   A     SULSULFATE ANION R - 82
1g4i_A_401g4i   A     CACALCIUM ION C - 45
1g4i_A_401g4i   A     MPD2-METHYL-2,4-PENTANEDIOL C - 45
1g4i_A_401g4i   A     MPD2-METHYL-2,4-PENTANEDIOL H - 48
1g4i_A_401g4i   A     CACALCIUM ION D - 49
1g4i_A_401g4i   A     MPD2-METHYL-2,4-PENTANEDIOL D - 49
1g4i_A_401g4i   A     MPD2-METHYL-2,4-PENTANEDIOL Y - 52
1gee_A_1971gee   A     NADNICOTINAMIDE-ADENINE-DINUCLEOTIDE F - 200
1gpu_A_1571gpu   A     CACALCIUM ION D - 157
1gpu_A_1571gpu   A     THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE D - 157
1gpu_A_1571gpu   A     CACALCIUM ION G - 158
1gpu_A_1571gpu   A     THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE G - 158
1gpu_A_1571gpu   A     THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE C - 159
1gpu_A_1571gpu   A     THD2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN DIPHOSPHATE E - 162
1hkk_A_1041hkk   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS D - 108
1hkk_A_1041hkk   A     ZNZINC ION D - 108
1hkk_A_1041hkk   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS M - 109
1hkk_A_1041hkk   A     ZNZINC ION M - 109
1hkk_A_1041hkk   A     ZN2ZINC ION ON 3-FOLD CRYSTAL AXIS N - 115
1hkk_A_1041hkk   A     ZNZINC ION N - 115
1itz_A_1681itz   A     MGMAGNESIUM ION D - 168
1itz_A_1681itz   A     TPPTHIAMINE DIPHOSPHATE D - 168
1itz_A_1681itz   A     MGMAGNESIUM ION G - 169
1itz_A_1681itz   A     TPPTHIAMINE DIPHOSPHATE G - 169
1itz_A_1681itz   A     TPPTHIAMINE DIPHOSPHATE C - 170
1itz_A_1681itz   A     TPPTHIAMINE DIPHOSPHATE M - 172
1itz_A_1681itz   A     TPPTHIAMINE DIPHOSPHATE E - 173
1iv8_A_5291iv8   A     MLZN-METHYL-LYSINE V - 535
1iv8_A_5291iv8   A     MLZN-METHYL-LYSINE M - 536
1iv8_A_5291iv8   A     MLZN-METHYL-LYSINE V - 539
1iv8_A_5291iv8   A     MLYN-DIMETHYL-LYSINE V - 539
1iv8_A_5291iv8   A     MLZN-METHYL-LYSINE E - 540
1iv8_A_5291iv8   A     MLYN-DIMETHYL-LYSINE E - 540
1iv8_A_5291iv8   A     MLYN-DIMETHYL-LYSINE F - 543
1iv8_A_5291iv8   A     MLYN-DIMETHYL-LYSINE T - 544
1iv8_A_5291iv8   A     MLZN-METHYL-LYSINE K - 550
1iv8_A_5291iv8   A     MLZN-METHYL-LYSINE S - 551
1iv8_A_5291iv8   A     MLZN-METHYL-LYSINE F - 552
1iv8_A_5291iv8   A     MLYN-DIMETHYL-LYSINE M - 553
1iv8_A_5291iv8   A     MLZN-METHYL-LYSINE K - 554
1iv8_A_5291iv8   A     MLYN-DIMETHYL-LYSINE K - 554
1iv8_A_5291iv8   A     MLZN-METHYL-LYSINE F - 555
1iv8_A_5291iv8   A     MLYN-DIMETHYL-LYSINE F - 555
1iv8_A_5291iv8   A     MLYN-DIMETHYL-LYSINE E - 556
1j8u_A_3451j8u   A     FE2FE (II) ION A - 345
1j8u_A_3451j8u   A     FE2FE (II) ION G - 346
1jdr_A_2331jdr   A     HEMPROTOPORPHYRIN IX CONTAINING FE T - 234
1jdr_A_2331jdr   A     HEMPROTOPORPHYRIN IX CONTAINING FE D - 235
1kjq_A_1051kjq   A     MGMAGNESIUM ION R - 114
1kjq_A_1051kjq   A     ADPADENOSINE-5'-DIPHOSPHATE R - 114
1kjq_A_1051kjq   A     ADPADENOSINE-5'-DIPHOSPHATE R - 118
1ln1_A_651ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE L - 68
1ln1_A_651ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE Y - 72
1ln1_A_651ln1   A     DLP1,2-DILINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE R - 78
1lri_A_441lri   A     CLRCHOLESTEROL Y - 47
1lri_A_441lri   A     CLRCHOLESTEROL M - 50
1lri_A_441lri   A     CLRCHOLESTEROL M - 59
1lri_A_441lri   A     CLRCHOLESTEROL I - 60
1lri_A_441lri   A     CLRCHOLESTEROL I - 63
1ltz_A_1991ltz   A     FEFE (III) ION A - 199
1ltz_A_1991ltz   A     FEFE (III) ION G - 200
1n1b_A_1231n1b   A     HGMERCURY (II) ION C - 139
1n1b_A_1231n1b   A     HGMERCURY (II) ION F - 140
1n62_C_781n62   C     FADFLAVIN-ADENINE DINUCLEOTIDE Q - 78
1n8v_A_131n8v   A     BDDBROMO-DODECANOL L - 13
1n8v_A_131n8v   A     BDDBROMO-DODECANOL I - 16
1n8v_A_131n8v   A     BDDBROMO-DODECANOL L - 17
1n8v_A_131n8v   A     BDDBROMO-DODECANOL L - 23
1n8v_A_131n8v   A     BDDBROMO-DODECANOL Y - 26
1n8v_A_131n8v   A     BDDBROMO-DODECANOL V - 27
1n8v_A_131n8v   A     BDDBROMO-DODECANOL V - 30
1ngk_A_121ngk   A     CNCYANIDE GROUP F - 22
1ngk_A_121ngk   A     HEMPROTOPORPHYRIN IX CONTAINING FE Y - 23
1ngk_A_121ngk   A     CNCYANIDE GROUP Y - 23
1ngk_A_121ngk   A     HEMPROTOPORPHYRIN IX CONTAINING FE L - 32
1ngk_A_121ngk   A     HEMPROTOPORPHYRIN IX CONTAINING FE V - 35
1rjd_A_1301rjd   A     SAMS-ADENOSYLMETHIONINE S - 132
1usp_A_1161usp   A     MSESELENOMETHIONINE A - 116
1usp_A_1161usp   A     MSESELENOMETHIONINE A - 117
1usp_A_1161usp   A     MSESELENOMETHIONINE H - 118
1usp_A_1161usp   A     MSESELENOMETHIONINE E - 119
1usp_A_1161usp   A     GOLGLYCEROL V - 120
1usp_A_1161usp   A     GOLGLYCEROL C - 121
1usp_A_1161usp   A     GOLGLYCEROL P - 122
1uvq_B_551uvq   B     ZNZINC ION D - 76
1uvq_B_551uvq   B     ZNZINC ION T - 77
1v4v_A_3211v4v   A     MSESELENOMETHIONINE L - 331
1v4v_A_3211v4v   A     MSESELENOMETHIONINE E - 336
1v4v_A_3211v4v   A     MSESELENOMETHIONINE E - 337
1v4v_A_3211v4v   A     MSESELENOMETHIONINE L - 338
1v4v_A_3211v4v   A     MSESELENOMETHIONINE S - 339
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1e4e_A_1241e4e   A AC3ADP BINDING SITE FOR CHAIN AK - 133
1gpu_A_1571gpu   A AC1CA BINDING SITE FOR CHAIN AD - 157
1gpu_A_1571gpu   A AC2THD BINDING SITE FOR CHAIN AE - 162
1hkk_A_1041hkk   A AC8ZN2 BINDING SITE FOR CHAIN AD - 108
1hkk_A_1041hkk   A AC8ZN2 BINDING SITE FOR CHAIN AN - 115
1usp_A_1161usp   A AC1GOL BINDING SITE FOR CHAIN AP - 122
1uvq_B_551uvq   B AC1ZN BINDING SITE FOR CHAIN BD - 76

Clusters included in this Subclass
CLUSTER: HH.0.5
CLUSTER: HH.1.24
CLUSTER: HH.2.7
CLUSTER: HH.3.105