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Information on SUBCLASS 2.3.1
Subclass Accession number: 8225
Subclass: 2.3.1 PSSM
Type: HE alpha-beta
DB: ArchDB-EC

Image coordinates: Rasmol PDB Jmol PDB
Consensus coordinates: Rasmol PDB Jmol PDB
Number of loops: 78

Average sequence ID (%) : 17.2 +/- 17.6
Average RMSD (Å) : 0.601 +/- 0.210

Consensus geometry
d (Å): 7 delta (°): 90-135 theta (°): 90-135 rho (°): 135-180
Consensus Sequence: pXcXhX
(φψ)-conformation: aalabb
Pattern: x[acfglmwy]x[adegknqrst]x[degknrs]x[ACFILMVWY]xx
Conservation:-0.632-0.231-0.4490.072-0.1381.877-0.7041.733-0.511-1.018
Loops included in this Subclass
LoopPDBChainStartEndSequenceSec StructRamachandran
1a79_A_471a79   A5261YLINLGWLEVHHHHHT-EEEaaaaavabbb
1aky_*_1861aky   -190199FYKKTGIWAGHHHHHT-EEEaaaaavaxbb
1ati_A_51ati   A1120LCKRRGFIFQHHHHTTSEEEaaaaavabbx
1b6a_*_4291b6a   -434443NLCDLGIVDPHHHHTTSEEEaaaaavabbx
1bpy_A_2081bpy   A217226QLQKVHFITDHHHTTTSEEEaaaaavaxab
1byb_*_1661byb   -167176DFLESGLIIDHHHHTT-EEEaaaaavaxab
1coy_*_2321coy   -235244QAAATGKLTIHHHHTT-EEEaaaaavabbb
1dd9_A_1761dd9   A181190SLIDAGMLVTHHHHTTSEEEaaaaavabbb
1ddg_A_5781ddg   A587596ELRVERRYQRHHHHTT-EEEaaaaavabbb
1dxy_*_2401dxy   -245254SNLKSGKLAGHHHHTTSEEEaaaaavaxab
1e6y_B_22621e6y   B22722281RAIEAGIISVHHHHTTSEEEaaaaavabbx
1ex7_A_551ex7   A6069SMIKNNEFIEHHHHTT-EEEaaaaalabab
1f7u_A_2991f7u   A308317LFKEKGLTHEHHHHTT-EEEaaaaavaxbx
1fa2_A_1671fa2   A168177DFLKAGDIVDHHHHHT-EEEaaaaavaxab
1fp1_D_811fp1   D91100LLASYSVLTSHHHHTTSEEEaaaaavabbb
1fp2_A_681fp2   A7786YLAHNGFFEIHHHHTTSEEEaaaaagabbx
1g19_A_2711g19   A278287MGVDQGLIRKHHHTTTSSEEaaaaavabbb
1gdh_A_2461gdh   A251260AALEAGRLAYHHHHHTSEEEaaaaavabab
1ghe_A_541ghe   A5564ADIAAGSLLLHHHHHTSEEEaaaaavabbb
1gtr_A_1031gtr   A112121ELINKGLAYVHHHHTTSEEEaaaaavabbx
1h3f_A_3841h3f   A389398RLIQNRGLRLHHHHTT-EEEaaaaalabbb
1h5r_A_2001h5r   A206215IYLEQGRLSVHHHHHT-EEEaaaaavaxxb
1h7b_A_521h7b   A5665KAHESGIIHVHHHHTTSEEEaaaaavabbx
1i50_B_6811i50   B683692SLLNEGLVEYHHHHTTSEEEaaaaalabbx
1i7d_A_5281i7d   A534543LLFKRGFLTKHHHHTTSEEEaaaaavabbb
1ikt_A_891ikt   A91100KAFFSGRLKAHHHHTTSSEEaaaaavabbb
1ile_*_1521ile   -164173NLFDRGLLYRHHHHTT-EEEaaaaalabbx
1j09_A_861j09   A95104ELLKRGWAYRHHHHHTSEEEaaaaavabbx
1j4a_A_2421j4a   A247256RGLDSGKIFGHHHHHTSEEEaaaaavaxab
1j79_A_861j79   A91100RGFNEGVFTAHHHHTTSEEEaaaaavaxab
1j8f_A_1471j8f   A154163LLKDKGLLLRHHHHTT-EEEaaaaavaxab
1ja1_A_6561ja1   A665674KLMTKGRYSLHHHHTTSEEEaaaaavabbb
1jhf_A_401jhf   A4958ALARKGVIEIHHHHTTSEEEaaaaavabbb
1jkx_A_1621jkx   A182191SWFADGRLKMHHHHTT-EEEaaaaavabbb
1jqk_A_421jqk   A4250GFGSAGLCC.HHHHHT-EE.aaaaavabb.
1jv1_A_871jv1   A96105FQISQNKVAVHHHHTT-EEEaaaaalabbb
1k1x_A_631k1x   A7180SLIKRGQLEIHHHHTT-EEEaaaaavabbx
1k6d_A_621k6d   A6372PLIVNGRVRKHHHHTT-EEEaaaaavabab
1k6d_A_821k6d   A8695RRMISGEMDVHHHHTTSSEEaaaaavabxb
1kyz_A_731kyz   A8392LLACYIILTCHHHHTTSEEEaaaaavabxb
1l1l_A_721l1l   A8796KLIYGLGATPHHHHTTSEEEaaaaavabbx
1li5_A_1181li5   A127136QLIAKGHAYVHHHHTTSEEEaaaaavabbx
1lox_*_2591lox   -267276KELKAGTLFEHHHHTT-EEEaaaaavaxbb
1lvg_A_581lvg   A6372RDIAAGDFIEHHHHHT-EEEaaaaavabab
1m2k_A_781m2k   A8594ELERLGVLKCHHHHTT-EEEaaaaavaxab
1ma3_A_801ma3   A8796ELERMGIVKAHHHHTTSEEEaaaaavaxab
1mml_*_681mml   -8089RLLDQGILVPHHHHTTSEEEaaaaavabbx
1mu2_A_281mu2   A4049KMEKEGQLEEHHHHHTSEEEaaaaagabbx
1mv8_A_511mv8   A5766QGRQTGRLSGHHHHTT-EEEaaaaavabbb
1mx3_A_2721mx3   A277286QALKEGRIRGHHHHHTSEEEaaaaavabab
1nj1_A_201nj1   A2735ILEEAEIID.HHHHTT-EE.aaaaalabb.
1o7d_A_1331o7d   A141150ELVRQGRLEFHHHHTTSEEEaaaaavabbb
1o9l_A_1001o9l   A101110LLLQSKQIKRHHHHTT-EEEaaaaalabab
1o9l_A_1201o9l   A124133RQYLAGELEVHHHHTT--EEaaaaavabbb
1ogi_A_2851ogi   A291300DLKKAGRWHVHHHHTT-EEEaaaaavabbb
1olt_A_4011olt   A409418PLAKDGLVDVHHHHTTSEEEaaaaavabxb
1oy5_A_251oy5   A2938QAIKKGKVEVHHHHHTSEEEaaaaavabbb
1oyw_A_4661oyw   A475484QLIHLGLVTQHHHHTTSEEEaaaaavabbb
1pja_A_2641pja   A266275TLLARGAIVRHHHHTT-EEEaaaaavaxbx
1pkh_A_51pkh   A1019DYVTSKRIIIHHHHTTSSEEaaaaavabxb
1poi_A_561poi   A6069MLIGNGRVKAHHHHTT-EEEaaaaalabab
1psd_A_2461psd   A251260DALASKHLAGHHHHTTSEEEaaaaavabab
1qbj_A_1691qbj   A178187SLAKKGKLQKHHHHTTSEEEaaaaavabbx
1qf9_A_1561qf9   A162171HYNKFDKVKIHHHHTT-EEEaaaaavabbx
1qfz_A_2901qfz   A296305TLKKAEQWNVHHHHTT-EEEaaaaavabbb
1qop_B_3111qop   B315324YLNSIGRADYHHHHTTSSEEaaaaavabbb
1rlr_*_1891rlr   -198206DAVSTFKIS.HHHHTTSEE.aaaaavabb.
1rlv_A_1831rlv   A188197YLLDLGKLNLHHHHTT-EEEaaaaavabbx
1ual_A_201ual   A2433RAVKHNLLKVHHHHTTSEEEaaaaavabbb
1ukz_*_1681ukz   -173182YFETKSKVVRHHHTTT-EEEaaaaalabbx
1vgv_A_3141vgv   A315323EAVTAGTVR.HHHHHTSEE.aaaaavabb.
1vrt_B_281vrt   B4049EMEKEGKISKHHHHTTSEEEaaaaavabbx
1xgs_A_2461xgs   A255264TLEKAGAIYGHHHHHTSEEEaaaaavabbx
1zin_*_1811zin   -185194FYEQKGYLRNHHHHHT-EEEaaaaavaxbx
2fok_A_1042fok   A113122WAHALGFIEYHHHHTTSEEEaaaaavabbb
2fok_A_2222fok   A233242WLDKLGLVKQHHHHTTSEEEaaaaavabbx
2nac_A_2902nac   A295304RALESGRLAGHHHHTTSEEEaaaaavabae
3thi_A_683thi   A7078HFVDAGYLL.HHHHTT-EE.aaaaavabb.
PDB ligands within a cut-off distance of 6 Å in this subclass
LoopPDBChainLigandsResidue
1b6a_*_4291b6a   *     TNP3,5,6,8-TETRAMETHYL-N-METHYL PHENANTHROLINIUM Y - 444
1ddg_A_5781ddg   A     FADFLAVIN-ADENINE DINUCLEOTIDE D - 597
1ddg_A_5781ddg   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 598
1ex7_A_551ex7   A     5GPGUANOSINE-5'-MONOPHOSPHATE E - 69
1ex7_A_551ex7   A     5GPGUANOSINE-5'-MONOPHOSPHATE W - 70
1ex7_A_551ex7   A     5GPGUANOSINE-5'-MONOPHOSPHATE A - 71
1ex7_A_551ex7   A     5GPGUANOSINE-5'-MONOPHOSPHATE F - 73
1h5r_A_2001h5r   A     G1PALPHA-D-GLUCOSE-1-PHOSPHATE I - 200
1h5r_A_2001h5r   A     G1PALPHA-D-GLUCOSE-1-PHOSPHATE T - 201
1h7b_A_521h7b   A     PO4PHOSPHATE ION H - 64
1ikt_A_891ikt   A     OXNOXTOXYNOL-10 P - 89
1ikt_A_891ikt   A     OXNOXTOXYNOL-10 Q - 90
1ikt_A_891ikt   A     OXNOXTOXYNOL-10 F - 93
1ikt_A_891ikt   A     OXNOXTOXYNOL-10 F - 94
1ikt_A_891ikt   A     OXNOXTOXYNOL-10 L - 98
1ikt_A_891ikt   A     OXNOXTOXYNOL-10 A - 100
1j79_A_861j79   A     KCXLYSINE NZ-CARBOXYLIC ACID A - 100
1ja1_A_6561ja1   A     FADFLAVIN-ADENINE DINUCLEOTIDE N - 675
1ja1_A_6561ja1   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 676
1ja1_A_6561ja1   A     FMNFLAVIN MONONUCLEOTIDE V - 676
1ja1_A_6561ja1   A     FADFLAVIN-ADENINE DINUCLEOTIDE W - 677
1ja1_A_6561ja1   A     NAPNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE W - 677
1jkx_A_1621jkx   A     138N-[5'-O-PHOSPHONO-RIBOFURANOSYL]-2-[2-HYDROXY-2-[4-[GLUTAMIC ACID]-N-CARBONYLPHENYL]-3-[2-AMINO-4-HYDROXY -QUINAZOLIN-6-YL]-PROPANYLAMINO]-ACETAMIDE T - 166
1jkx_A_1621jkx   A     138N-[5'-O-PHOSPHONO-RIBOFURANOSYL]-2-[2-HYDROXY-2-[4-[GLUTAMIC ACID]-N-CARBONYLPHENYL]-3-[2-AMINO-4-HYDROXY -QUINAZOLIN-6-YL]-PROPANYLAMINO]-ACETAMIDE V - 169
1jkx_A_1621jkx   A     138N-[5'-O-PHOSPHONO-RIBOFURANOSYL]-2-[2-HYDROXY-2-[4-[GLUTAMIC ACID]-N-CARBONYLPHENYL]-3-[2-AMINO-4-HYDROXY -QUINAZOLIN-6-YL]-PROPANYLAMINO]-ACETAMIDE Q - 170
1jkx_A_1621jkx   A     138N-[5'-O-PHOSPHONO-RIBOFURANOSYL]-2-[2-HYDROXY-2-[4-[GLUTAMIC ACID]-N-CARBONYLPHENYL]-3-[2-AMINO-4-HYDROXY -QUINAZOLIN-6-YL]-PROPANYLAMINO]-ACETAMIDE E - 173
1jkx_A_1621jkx   A     138N-[5'-O-PHOSPHONO-RIBOFURANOSYL]-2-[2-HYDROXY-2-[4-[GLUTAMIC ACID]-N-CARBONYLPHENYL]-3-[2-AMINO-4-HYDROXY -QUINAZOLIN-6-YL]-PROPANYLAMINO]-ACETAMIDE H - 174
1jqk_A_421jqk   A     FE2FE (II) ION G - 42
1jqk_A_421jqk   A     SF4IRON/SULFUR CLUSTER G - 42
1jqk_A_421jqk   A     FE2FE (II) ION F - 43
1jqk_A_421jqk   A     SF4IRON/SULFUR CLUSTER F - 43
1jqk_A_421jqk   A     FE2FE (II) ION G - 44
1jqk_A_421jqk   A     SF4IRON/SULFUR CLUSTER G - 44
1jqk_A_421jqk   A     SF4IRON/SULFUR CLUSTER S - 45
1jqk_A_421jqk   A     FE2FE (II) ION C - 49
1jqk_A_421jqk   A     SF4IRON/SULFUR CLUSTER C - 49
1jqk_A_421jqk   A     FE2FE (II) ION C - 50
1jqk_A_421jqk   A     SF4IRON/SULFUR CLUSTER C - 50
1jv1_A_871jv1   A     UD1URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE L - 107
1jv1_A_871jv1   A     UD1URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE L - 108
1lvg_A_581lvg   A     5GPGUANOSINE-5'-MONOPHOSPHATE E - 72
1lvg_A_581lvg   A     5GPGUANOSINE-5'-MONOPHOSPHATE H - 73
1lvg_A_581lvg   A     5GPGUANOSINE-5'-MONOPHOSPHATE A - 74
1lvg_A_581lvg   A     5GPGUANOSINE-5'-MONOPHOSPHATE F - 76
1o7d_A_1331o7d   A     NAGN-ACETYL-D-GLUCOSAMINE N - 133
1o9l_A_1201o9l   A     EMT2-(ETHYLMERCURI-THIO)-BENZOIC ACID F - 122
1o9l_A_1201o9l   A     EMT2-(ETHYLMERCURI-THIO)-BENZOIC ACID Y - 126
1o9l_A_1201o9l   A     EMT2-(ETHYLMERCURI-THIO)-BENZOIC ACID V - 133
1o9l_A_1201o9l   A     EMT2-(ETHYLMERCURI-THIO)-BENZOIC ACID E - 134
1o9l_A_1201o9l   A     EMT2-(ETHYLMERCURI-THIO)-BENZOIC ACID L - 135
1ogi_A_2851ogi   A     FADFLAVIN-ADENINE DINUCLEOTIDE E - 301
1ogi_A_2851ogi   A     FADFLAVIN-ADENINE DINUCLEOTIDE T - 302
1oyw_A_4661oyw   A     MSESELENOMETHIONINE W - 469
1oyw_A_4661oyw   A     MSESELENOMETHIONINE V - 470
1oyw_A_4661oyw   A     MSESELENOMETHIONINE S - 471
1oyw_A_4661oyw   A     MSESELENOMETHIONINE I - 473
1oyw_A_4661oyw   A     MSESELENOMETHIONINE R - 474
1oyw_A_4661oyw   A     MSESELENOMETHIONINE I - 477
1oyw_A_4661oyw   A     MSESELENOMETHIONINE Q - 484
1qfz_A_2901qfz   A     FADFLAVIN-ADENINE DINUCLEOTIDE E - 306
1qfz_A_2901qfz   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE E - 306
1qfz_A_2901qfz   A     FADFLAVIN-ADENINE DINUCLEOTIDE V - 307
1qfz_A_2901qfz   A     NDPNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE V - 307
1vgv_A_3141vgv   A     MSESELENOMETHIONINE G - 320
1vgv_A_3141vgv   A     MSESELENOMETHIONINE T - 321
1vgv_A_3141vgv   A     MSESELENOMETHIONINE V - 322
1vgv_A_3141vgv   A     MSESELENOMETHIONINE R - 323
PDB Site Annotated loops in this subclass
LoopPDBChainSiteResidue
1o7d_A_1331o7d   A GC1GLYCOSYLATION SITE 1N - 133
1o9l_A_1201o9l   A AC2EMT BINDING SITE FOR CHAIN AY - 126
1o9l_A_1201o9l   A AC2EMT BINDING SITE FOR CHAIN AE - 134
1o9l_A_1201o9l   A AC2EMT BINDING SITE FOR CHAIN AL - 135
1ogi_A_2851ogi   A AC1FAD BINDING SITE FOR CHAIN AE - 301

Clusters included in this Subclass
CLUSTER: HE.1.15
CLUSTER: HE.2.6
CLUSTER: HE.3.10
CLUSTER: HE.3.191
CLUSTER: HE.4.7
CLUSTER: HE.5.133