Information on SUBCLASS 4.1.1 |
Subclass Accession number: 8406
Subclass: 4.1.1 Type: HE alpha-beta DB: ArchDB-EC Image coordinates: Consensus coordinates: |
Number of loops: 116 Average sequence ID (%) : 16.2 +/- 16.5 Average RMSD (Å) : 0.700 +/- 0.327 Consensus geometry
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Consensus Sequence: | XXXPphXh |
(φψ)-conformation: | aabaapbb |
Pattern: | x | x | [acfgilmtv] | x | [adegknqrst] | x | x | [dekpqrs] | [adegknqrst] | [acfilmptv] | x | [acfgilmpvwy] | x |
Conservation: | -0.355 | -0.705 | 0.331 | -0.179 | -0.144 | -0.694 | -0.820 | 2.873 | 0.527 | -0.245 | -0.932 | 0.691 | -0.349 |
Loops included in this Subclass |
Loop | PDB | Chain | Start | End | Sequence | Sec Struct | Ramachandran |
1b16_A_42 | 1b16 | A | 46 | 58 | AELKAINPKVNIT | HHHHHH-TTSEEE | aaaaaabaaxxbb |
1b31_A_152 | 1b31 | A | 159 | 171 | ETARSVDPNAKLY | HHHHHH-TTSEEE | aaaaaabaaxxxb |
1bd3_A_199 | 1bd3 | A | 203 | 215 | ERVFKEYPKVRMV | HHHHHH-TT-EEE | aaaaaabaaxbbb |
1bfd_*_406 | 1bfd | - | 411 | 423 | IGVQLAEPERQVI | HHHHHH-TTS-EE | aaaaaabaabxxb |
1bpy_A_152 | 1bpy | A | 164 | 176 | NEVKKVDSEYIAT | HHHHHH-TT-EEE | aaaaaabaaxbbb |
1bqg_*_219 | 1bqg | - | 227 | 239 | TALSERFPDARIT | HHHHHH-TTSEEE | aaaaaabaaxbbb |
1bxn_I_61 | 1bxn | I | 69 | 81 | NNARNTFPNHYIR | HHHHHH-SSSEEE | aaaaaabaabxbb |
1c0d_A_178 | 1c0d | A | 187 | 199 | NAVLSVNPNLLIF | HHHHTT-TTSEEE | aaaaaabaaxxbb |
1ceo_*_147 | 1ceo | - | 158 | 170 | KAIREIDSTMWLY | HHHHHH-SS--EE | aaaaaabaaxxbb |
1chm_A_130 | 1chm | A | 134 | 146 | DKLAARYPDAELV | HHHHHH-TT-EEE | aaaaaabaabxbb |
1cl1_A_166 | 1cl1 | A | 171 | 183 | AAVRSVVPDAIIM | HHHHHH-TT-EEE | aaaaaabaaxbbb |
1clx_A_158 | 1clx | A | 165 | 177 | RRARAADPTAELY | HHHHHH-TTSEEE | aaaaaabaaxxbb |
1cus_*_92 | 1cus | - | 103 | 115 | QQANTKCPDATLI | HHHHHH-TT-EEE | aaaaaabaaxxbb |
1d3v_A_104 | 1d3v | A | 109 | 121 | SGHARVHPDLCVI | HHHHHH-TT-EEE | aaaaaabaaxbbb |
1d7k_B_136 | 1d7k | B | 140 | 152 | MKVARAHPKAKLV | HHHHHH-TT-EEE | aaaaaabaaxxbb |
1d7k_B_45 | 1d7k | B | 53 | 65 | LRWLKALPRVTPF | HHHHHH-TT-EEE | aaaaaabaabxwb |
1dlj_A_95 | 1dlj | A | 102 | 114 | KEVLSVNSHATLI | HHHHHH-SS-EEE | aaaaaabaaxxxb |
1dqa_A_657 | 1dqa | A | 669 | 681 | SKLHEYFPEMQIL | HHHHHH-TT-EEE | aaaaaabaaxbxa |
1dqu_A_401 | 1dqu | A | 409 | 421 | DGVHAVWPEQKLA | HHHHHH-TT-EEE | aaaaaabaaxxbb |
1ec7_A_213 | 1ec7 | A | 221 | 233 | VALAQRFPQARIT | HHHHHH-TTSEEE | aaaaaabaaxxbb |
1edt_*_148 | 1edt | - | 154 | 166 | TALRANMPDKIIS | HHHHHH-TTSEEE | aaaaaabaabxbb |
1eep_A_179 | 1eep | A | 186 | 198 | KKIKTKYPNLDLI | HHHHHH-TT-EEE | aaaaaabaaxxbx |
1ep3_A_88 | 1ep3 | A | 90 | 102 | PWLNENFPELPII | HHHHHH-TTS-EE | aaaaaabaaxxbb |
1es9_A_110 | 1es9 | A | 122 | 134 | QLVNERQPQARVV | HHHHHHSTT-EEE | aaaaaabaaxxbb |
1esc_*_149 | 1esc | - | 170 | 182 | DRIGYFAPDAKRV | HHHHHHSTT-EEE | aaaaaabaaxxbb |
1eua_A_142 | 1eua | A | 147 | 159 | QAIAGPFSQVRFC | HHHSTT-TT-EEE | aaaaaabaaxbbb |
1exp_*_149 | 1exp | - | 155 | 167 | RAARAADPTAKLC | HHHHHH-SSSEEE | aaaaaabaapxbb |
1f3t_A_136 | 1f3t | A | 140 | 152 | EKVAKTHPKAKMV | HHHHHH-TT-EEE | aaaaaabaaxxxb |
1f8m_A_291 | 1f8m | A | 299 | 311 | EAVKAEYPDQMLA | HHHHTT-TT-EEE | aaaaaabaaxxbb |
1fcq_A_146 | 1fcq | A | 170 | 182 | KAAKRMRPAANWG | HHHHHHSTTSEEE | aaaaaabaaxbbb |
1fp1_D_222 | 1fp1 | D | 225 | 237 | ELIISKYPLIKGI | HHHHHH-TT-EEE | aaaaaabaaxxxb |
1fxw_F_111 | 1fxw | F | 123 | 135 | QLINTRQPQAKII | HHHHHH-TT-EEE | aaaaaabaaxxbb |
1fy2_A_171 | 1fy2 | A | 176 | 188 | RELLVVAPELTVI | HHHHHHSTT-EEE | aaaaaabaaxbbb |
1g2o_A_162 | 1g2o | A | 166 | 178 | ELARQSDPQLAEG | HHHHHH-TT-EEE | aaaaaabaapxbb |
1gk8_I_86 | 1gk8 | I | 94 | 106 | VACTKAFPDAYVR | HHHHHH-TTSEEE | aaaaaabaaxxbb |
1gpj_A_62 | 1gpj | A | 64 | 76 | ELGDLIHDDAWVK | HHHHTT-TT-EEE | aaaaaabaapxbb |
1gpu_A_224 | 1gpu | A | 231 | 243 | IAQAKLSKDKPTL | HHHHHH-TTS-EE | aaaaaaxaabxbb |
1gqn_A_58 | 1gqn | A | 66 | 78 | RVIRDAMPDIPLL | HHHHHH-TTS-EE | aaaaaabaaxwbb |
1gte_A_688 | 1gte | A | 696 | 708 | RWVRQAVQIPFFA | HHHHHH-SS-EEE | aaaaaabaxwbbx |
1gtk_A_14 | 1gtk | A | 25 | 37 | DKLMASHPGLVVE | HHHHHH-TT-EEE | aaaaaabaaxbbb |
1gv0_A_92 | 1gv0 | A | 103 | 115 | GRIMEHSKNPIIV | HHHTTT-SS-EEE | aaaaaabaaxbxb |
1gv1_A_87 | 1gv1 | A | 103 | 115 | DNIMKHSKNPIII | HHHTTT-SS-EEE | aaaaaabaaxbbb |
1gvf_A_191 | 1gvf | A | 195 | 207 | AEIREVVDVPLVL | HHHHHH--S-EEE | aaaaaabaxpxbb |
1gyn_A_199 | 1gyn | A | 207 | 219 | TELSKISPRFTIA | HHHHTT-S-EEEE | aaaaaabaxbbbx |
1h5y_A_187 | 1h5y | A | 191 | 203 | RRVADSVRIPVIA | HHHHHH-SS-EEE | aaaaaabaxxbxx |
1h7n_A_111 | 1h7n | A | 117 | 129 | KFIREYFPELYII | HHHHHH-TTSEEE | aaaaaabaaxxbb |
1i0z_A_110 | 1i0z | A | 122 | 134 | PQIVKYSPDCIII | HHHHHH-TT-EEE | aaaaaabaaxbbb |
1i1w_A_152 | 1i1w | A | 158 | 170 | QTARAADPNAKLY | HHHHHH-TTSEEE | aaaaaabaaxxxb |
1i24_A_110 | 1i24 | A | 129 | 141 | FAIKEFGEECHLV | HHHHHH-TT-EEE | aaaaaabaaxxxb |
1i5e_A_164 | 1i5e | A | 168 | 180 | KAVETAHPDVDIY | HHHHHH-TT-EEE | aaaaaabaabxbb |
1i5e_A_85 | 1i5e | A | 86 | 97 | DGILKLIPAAKV. | HHHHHH-TTSEE. | aaaaaabaapxb. |
1iib_A_64 | 1iib | A | 65 | 77 | PEIQRLLPNKPVE | HHHHHH-TTS-EE | aaaaaabaabwbb |
1im4_A_61 | 1im4 | A | 62 | 74 | IKAMQIAPSAIYV | HHHHHH-TTSEEE | aaaaaabaaxxbb |
1j0h_A_335 | 1j0h | A | 343 | 355 | QEVKALKPDVYIL | HHHHHH-TT-EEE | aaaaaabaaxxbb |
1j6u_A_322 | 1j6u | A | 330 | 342 | QTAKEVFENEKIV | HHHHHH-SSSEEE | aaaaaabaaxxbb |
1j93_A_229 | 1j93 | A | 237 | 249 | DSVKLTHPNLPLI | HHHHHHSTT--EE | aaaaaabaaxwbb |
1ji1_A_371 | 1ji1 | A | 382 | 394 | NAVKGVNSNAAII | HHHHHH-TT-EEE | aaaaaabaaxxbb |
1ji2_A_332 | 1ji2 | A | 340 | 352 | RLVKSLNPDALIV | HHHHHH-TT-EEE | aaaaaabaaxxbb |
1jms_A_305 | 1jms | A | 317 | 329 | EAVVTFLPDALVT | HHHHHH-TT-EEE | aaaaaabaaxbbb |
1jr1_A_281 | 1jr1 | A | 288 | 300 | KYMKEKYPNLQVI | HHHHHHSTT-EEE | aaaaaabaapxbb |
1jr1_B_281 | 1jr1 | B | 288 | 300 | KYMKEKYPNLQVI | HHHHHH-TTSEEE | aaaaaabaaxxbb |
1jvn_A_482 | 1jvn | A | 486 | 498 | EHVKDAVKIPVIA | HHHHHH-SS-EEE | aaaaaabaxpbxx |
1jz7_A_466 | 1jz7 | A | 473 | 485 | RWIKSVDPSRPVQ | HHHHHH-TTS-EE | aaaaaabaabxbb |
1kbl_A_808 | 1kbl | A | 817 | 829 | KKGRQTRPGLKCG | HHHHHH-TT-EEE | aaaaaabaapxbb |
1kor_A_121 | 1kor | A | 127 | 139 | LTAYALKPDIKVI | HHHHHH-TT-EEE | aaaaaabaaxbbb |
1l6s_A_97 | 1l6s | A | 103 | 115 | RICKQTVPEMIVM | HHHHHH-TTSEEE | aaaaaabaaxxxb |
1l6w_A_142 | 1l6w | A | 151 | 163 | QLLKMHAPQAKVL | HHHHHH-TT-EEE | aaaaaabaaxbxb |
1ldg_*_113 | 1ldg | - | 125 | 137 | GHIKKNCPNAFII | HHHHHH-TTSEEE | aaaaaabaaxxbb |
1lhp_A_88 | 1lhp | A | 99 | 111 | QELKQQNPRLVYV | HHHHHH-TT-EEE | aaaaaabaaxbbx |
1lld_A_93 | 1lld | A | 109 | 121 | PNLVKVAPNAIYM | HHHHHH-TTSEEE | aaaaaabaaxxbb |
1m6i_A_141 | 1m6i | A | 148 | 160 | RSIRARDPGARVL | HHHHHHSTT-EEE | aaaaaabaapbbb |
1mg5_A_43 | 1mg5 | A | 47 | 59 | AELKAINPKVTVT | HHHHHH-TTSEEE | aaaaaabaaxxbb |
1mld_A_90 | 1mld | A | 102 | 114 | AACAQHCPDAMIC | HHHHHH-TTSEEE | aaaaaabaaxxbb |
1mml_*_208 | 1mml | - | 208 | 220 | ADFRIQHPDLILL | HHHHHH-TTSEEE | aaaaaabaabbbb |
1mpp_*_225 | 1mpp | - | 230 | 242 | KVVKAALPDATES | HHHHHH-TT-EEE | aaaaaabaaxxxb |
1mxs_A_154 | 1mxs | A | 159 | 171 | KAFGGPFGDIRFC | HHHHTTTTT-EEE | aaaaaabaabbbb |
1mzh_A_201 | 1mzh | A | 209 | 221 | KEIFRETPSAVHK | HHHHHT-TTSEEE | aaaaaabaabxbb |
1nst_A_686 | 1nst | A | 688 | 700 | RRAAALLPKAKVL | HHHHHH-TT-EEE | aaaaaabaapxbb |
1nul_A_97 | 1nul | A | 98 | 110 | VAIREMYPKAHFV | HHHHHH-TTSEEE | aaaaaabaaxxxb |
1nvm_A_69 | 1nvm | A | 74 | 86 | EAVAGEISHAQIA | HHHHTT-SSSEEE | aaaaaabNaxxxb |
1o5o_A_164 | 1o5o | A | 168 | 180 | EAVEKKYEDVKIY | HHHHHH-TT-EEE | aaaaaabaaxxbb |
1o5o_A_81 | 1o5o | A | 86 | 97 | DGILELLPNASV. | HHHHHHSTT-EE. | aaaaaabaaxxb. |
1o6b_A_102 | 1o6b | A | 104 | 116 | SVNRVLDESIETF | HHHHHH-TTSEEE | aaaaaabaabxbb |
1oaa_*_45 | 1oaa | - | 53 | 65 | EELGAQQPDLKVV | HHHHHH-TTSEEE | aaaaaabaabxbb |
1obb_A_126 | 1obb | A | 137 | 149 | RKIEKLSPKAWYL | HHHHHH-TT-EEE | aaaaaabaaxxbb |
1od8_A_150 | 1od8 | A | 156 | 168 | RTARAADPSAKLC | HHHHHH-TTSEEE | aaaaaabaaxxxb |
1ogs_A_320 | 1ogs | A | 325 | 337 | GETHRLFPNTMLF | HHHHHH-TTSEEE | aaaaaabaabxbb |
1ovm_A_412 | 1ovm | A | 418 | 430 | FGAQTACPNRRVI | HHHHHH-TTS-EE | aaaaaabaabxbb |
1oy0_A_83 | 1oy0 | A | 87 | 99 | RGVVRGAPHALVV | HHHHHH-TTSEEE | aaaaaabaaxxxb |
1p5h_A_109 | 1p5h | A | 110 | 122 | EYIQELNPRVILA | HHHHHH-TT-EEE | aaaaaabaaxbbb |
1pii_*_99 | 1pii | - | 101 | 113 | PIVSQIAPQPILC | HHHHHH--S-EEE | aaaaaabaxxbxx |
1pq3_A_123 | 1pq3 | A | 128 | 140 | SGHARHCPDLCVV | HHHHTT-TT-EEE | aaaaaabaaxbbb |
1pv8_A_258 | 1pv8 | A | 262 | 274 | REVKDKHPDLPLA | HHHHHHSTTS-EE | aaaaaabaabwbx |
1pvd_A_417 | 1pvd | A | 427 | 439 | FAAEEIDPKKRVI | HHHHHH-TT--EE | aaaaaabaaxbbb |
1qap_A_195 | 1qap | A | 200 | 212 | EKAFWLHPDVPVE | HHHHHHSTTS-EE | aaaaaabaaxxbb |
1qe5_A_177 | 1qe5 | A | 181 | 193 | ELAHRVDPTLPEG | HHHHHH-TT--EE | aaaaaabaapxbb |
1qjc_A_96 | 1qjc | A | 104 | 116 | HMNRHLMPELESV | HHHHHH-TTSEEE | aaaaaabaabxxb |
1qop_A_78 | 1qop | A | 86 | 98 | AIIREKHPTIPIG | HHHHHH-SSS-EE | aaaaaabaaxwbb |
1qpo_A_182 | 1qpo | A | 187 | 199 | RAVRNAAPDLPCE | HHHHHH-TTS-EE | aaaaaabaabpbb |
1qpo_A_226 | 1qpo | A | 234 | 246 | QRRDSRAPTVMLE | HHHHHH-TT-EEE | aaaaaabaaxxbb |
1qw9_A_187 | 1qw9 | A | 199 | 211 | KVMKWVDPTIELV | HHHHHH-TT-EEE | aaaaaabaaxbbb |
1srr_A_62 | 1srr | A | 67 | 79 | KRMKVIDENIRVI | HHHHHH-TT-EEE | aaaaaabaaxbbb |
1tml_*_127 | 1tml | - | 142 | 154 | KALKAGSSQARIY | HHHHHH-TT-EEE | aaaaaabaaxbbb |
1tyf_A_37 | 1tyf | A | 48 | 60 | LFLEAENPEKDIY | HHHHHH-SSS-EE | aaaaaabaaxpbb |
1ujp_A_76 | 1ujp | A | 84 | 96 | REVRALTEKPLFL | HHHHHH--S-EEE | aaaaaabaxpbbx |
1ur5_A_90 | 1ur5 | A | 104 | 116 | SQAAPLSPNAVII | HHHGGG-TT-EEE | aaaaaabaaxbxb |
1xyz_A_667 | 1xyz | A | 673 | 685 | RYAREADPDALLF | HHHHHH-TTSEEE | aaaaaabaaxxxb |
1yaa_A_107 | 1yaa | A | 117 | 129 | KFFSKFFPDKLVY | HHHHHH-TT--EE | aaaaaabaaxxbx |
1zfj_A_260 | 1zfj | A | 267 | 279 | AEIRAHFPNRTLI | HHHHHH-SSS-EE | aaaaaabaapxbb |
2ay1_A_107 | 2ay1 | A | 117 | 129 | ELARMANPDLRVF | HHHHHH-TT--EE | aaaaaabaaxbbb |
2ebn_*_149 | 2ebn | - | 157 | 169 | YETKQAMPNKLVT | HHHHHH-TTSEEE | aaaaaabaabxbb |
2ptd_*_91 | 2ptd | - | 99 | 111 | KQFLKDNPSETII | HHHHHH-TT--EE | aaaaaabaaxbbb |
3rub_S_80 | 3rub | S | 88 | 100 | EEAKKAYPQAWIR | HHHHHH-TTSEEE | aaaaaabaaxxbb |
3thi_A_22 | 3thi | A | 31 | 43 | DQWQRQEPGVKLE | HHHHHH-TTSEEE | aaaaaabaabxbb |
8ruc_I_80 | 8ruc | I | 88 | 100 | EECKKEYPNAFIR | HHHHHH-TTSEEE | aaaaaabaabxbb |
9ldt_A_113 | 9ldt | A | 125 | 137 | PNIVKYSPNCKLL | HHHHHH-TT-EEE | aaaaaabaaxbxb |
PDB ligands within a cut-off distance of 6 Å in this subclass |
PDB Site Annotated loops in this subclass |
Loop | PDB | Chain | Site | Residue |
1gte_A_688 | 1gte | A | MA1FMN BINDING SITE FOR CHAIN A | K - 709 |
1gtk_A_14 | 1gtk | A | AC1DPM BINDING SITE FOR CHAIN A | L - 15 |
1gv0_A_92 | 1gv0 | A | NAANAD BINDING SITE FOR CHAIN A | N - 94 |
1gv0_A_92 | 1gv0 | A | NAANAD BINDING SITE FOR CHAIN A | I - 97 |
1gv0_A_92 | 1gv0 | A | NAANAD BINDING SITE FOR CHAIN A | E - 100 |
1obb_A_126 | 1obb | A | AC1NAD BINDING SITE FOR CHAIN A | Y - 131 |
1ogs_A_320 | 1ogs | A | BC1SO4 BINDING SITE FOR CHAIN A | R - 329 |
1ogs_A_320 | 1ogs | A | AC1SO4 BINDING SITE FOR CHAIN A | E - 340 |
Clusters included in this Subclass |